PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G063000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 302aa MW: 32429.8 Da PI: 8.1257

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G063000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.5e-16	21	65	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW+++E+e+++da ++G + Wk+I +++ ++t q++s+ qky Brast08G063000.1.p 21 RERWSPDEHERFLDAMLRFGRD-WKKIEEHVR-TKTTVQIRSHAQKY 65 78****************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-17	15	71	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.406	16	70	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-9	19	72	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-10	20	68	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.5E-16	20	68	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-13	21	65	IPR001005	SANT/Myb domain
CDD	cd00167	3.57E-8	23	66	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEETPGTGKK ARKPYTITRP RERWSPDEHE RFLDAMLRFG RDWKKIEEHV RTKTTVQIRS 60 HAQKYFLKVQ KLGLAAGLPP QHPIRKLGMA QLQSTQGPAA GSGAVPGPMM VLHGQPQECP 120 PGVLLQSSIG WSCPGLLPAS NDIQSLGWEG SSGPSSAWVS HGGNQPEPTA AGAHPGGSPS 180 SSSSMGAPSF GNTSMDWAGT GSATQASAIA GAEDDTIPLP LSPDDMHFAQ VYRFVGDVFD 240 PATPCQIEAH LQRLKDMDAI TVKTILLVLR NLEANLTAPQ FEPIRRLLSR YDPGRALFGQ 300 L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G063000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227459.1	1e-174	protein REVEILLE 5 isoform X1
TrEMBL	A0A0Q3H4R9	1e-172	A0A0Q3H4R9_BRADI; Uncharacterized protein
STRING	ORGLA01G0032300.1	1e-130	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3642	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.2	1e-46	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Brast08G063000.1.p