PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G062600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 303aa    MW: 32019.5 Da    PI: 6.9737
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G062600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.83.5e-2956133379
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesss 79 
                         g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++s +  +++  
  Brast08G062600.1.p  56 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQREIDKLPPLDFPPPSGVvPHAHLM 133
                         68*************************************************************999997764333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.16957115IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-2657119IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MHMHNANEEQ PGGAGIANKA LQLHRQHQAA ISSSPSSLPP QWTAESRIVR VSRVLGGKDR  60
HSKVRTVKGL RDRRVRLSVP TAIQLYDLQD RLGLSQPSKV VDWLLDAAQR EIDKLPPLDF  120
PPPSGVVPHA HLMAMASMAP PGFSAPTTPV DDSGGGHKQA AGPMGHDGER KGYFMGLVSG  180
PSSLAAHASP YHHHQYAGAG AETWSNNGGN NAHDYLSGGH HHQRADSVPQ AGHGHAAPCF  240
PSLLSLAPAM SQFVFYSAAE GGFGAMKEAG DGDEDDQFPV DNLDGSQGQL SLSSDRSFLH  300
SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2062116155Putative transcription factor PCF6
5zkt_B4e-2062116155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G062600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566051.11e-115transcription factor PCF6
RefseqXP_010231175.11e-115transcription factor PCF6
TrEMBLI1HHQ11e-113I1HHQ1_BRADI; Uncharacterized protein
STRINGBRADI2G20060.11e-114(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.14e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5