PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G057900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-PHD

Protein Properties

Length: 955aa MW: 104633 Da PI: 4.6305

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G057900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.3	9.6e-12	764	816	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R++f + ++L e+Fe ++yp+++ +e +A++lgLt +qV+ WF rR k + Brast08G057900.1.p 764 RRQFGPIINQRLHEHFETDQYPKRAVKESIANELGLTFQQVTKWFETRRHKTR 816 66777777799***************************************987 PP
2	PHD	39.9	9.4e-14	202	257	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ + +++++lCdg C++ fH++Cl+++l ++++p g wlC+ C++k Brast08G057900.1.p 202 ICATCSSqdVTLNNDIILCDGvCDRGFHQNCLNPPLLTKDIPAGdeGWLCPACDCK 257 6****64445****77****************9999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	2.17E-12	196	260	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	3.9E-12	199	256	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.967	200	257	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	1.1E-10	202	255	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	8.2E-11	202	257	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	203	254	IPR019786	Zinc finger, PHD-type, conserved site
CDD	cd15504	8.44E-25	203	254	No hit	No description
SuperFamily	SSF46689	1.54E-10	757	816	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.993	758	818	IPR001356	Homeobox domain
SMART	SM00389	6.0E-10	760	822	IPR001356	Homeobox domain
CDD	cd00086	1.59E-11	764	816	No hit	No description
Pfam	PF00046	3.3E-9	764	816	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.1E-10	771	824	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	793	816	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 955 aa Download sequence Send to blast
MDKDTGSGCA EDNVENGNYA NSSQNPETSQ SLENNKGQRK NYKRTANRGR KCYQVLADRN 60 YPLRSSDSTV RVLRSRSAAN KPPSDSVHTL VQPTAKRIKR GRPTKIGPNN EFSKIRQRVR 120 YILNRMNYEQ SLLEAYANEG WKRQSLEKIR PEKELERAKE EIVRCKLRIR EAFQNLDSLL 180 LAGKLEESLF DNEGKISCED IICATCSSQD VTLNNDIILC DGVCDRGFHQ NCLNPPLLTK 240 DIPAGDEGWL CPACDCKIDC INVINELQGT NLSISDPWEK VFPEAAASAH GTIPSDAFDL 300 PSDDSEDNDF DPNIAEEHVT GHKEGSSDED EDEGSDSDDS NFVTSSDNSE HSKEKEKVDD 360 LGLPSEDSED DDYDPAGPDS DKDITEKQDE SDFTSDSDDF CAEIAKSCGR DEVSSGAKVG 420 DPTNDLEGAA ACSNTAIPNL TSKDLEIDQD EVLPVLGRRQ GQRLDYKKLY DDAYGEAPSD 480 SSDGEDWSGK STSEKGDEER NEEDSFLQKS SRGTGAVHQS NDSLPQSARQ SLDPDGLVNG 540 QHPGKLTSDV SNSKANRRPL NNKEEVDDLG LPLEDSEDDD YDPAGPDSDT DIEKKQSSSN 600 ESDYSSASDD FCGEIAKSCG REGVSSGAKA GGHPTNDLKG TAVRTNGAIS NLPSKDPQMD 660 KDVVSPVSGR RQDQSLDRKK LYDEAYREAP SDLSDGEDWS GKCATERDSE KQSEAGSFIR 720 RRTGAVRQSN ESTADNARQS LHRVNGQHTE ELLTSDGSSS TVQRRQFGPI INQRLHEHFE 780 TDQYPKRAVK ESIANELGLT FQQVTKWFET RRHKTRVATN KNDSRVKNRS IKGNQSSVAA 840 HIEVTDPKEL GKKLNVCKNG AANDVMASGI LNGGIKQDSP LKQDTSGGLG THVSPPGSSP 900 KGDPIENHGN NTSSRCVGRP KDGYTENVVL ALPVVDDRTK KAAMRELKKR KTGS*

Sequence ? help Back to Top

Protein Sequence Length: 955 aa Download sequence Send to blast

MDKDTGSGCA EDNVENGNYA NSSQNPETSQ SLENNKGQRK NYKRTANRGR KCYQVLADRN  60
YPLRSSDSTV RVLRSRSAAN KPPSDSVHTL VQPTAKRIKR GRPTKIGPNN EFSKIRQRVR  120
YILNRMNYEQ SLLEAYANEG WKRQSLEKIR PEKELERAKE EIVRCKLRIR EAFQNLDSLL  180
LAGKLEESLF DNEGKISCED IICATCSSQD VTLNNDIILC DGVCDRGFHQ NCLNPPLLTK  240
DIPAGDEGWL CPACDCKIDC INVINELQGT NLSISDPWEK VFPEAAASAH GTIPSDAFDL  300
PSDDSEDNDF DPNIAEEHVT GHKEGSSDED EDEGSDSDDS NFVTSSDNSE HSKEKEKVDD  360
LGLPSEDSED DDYDPAGPDS DKDITEKQDE SDFTSDSDDF CAEIAKSCGR DEVSSGAKVG  420
DPTNDLEGAA ACSNTAIPNL TSKDLEIDQD EVLPVLGRRQ GQRLDYKKLY DDAYGEAPSD  480
SSDGEDWSGK STSEKGDEER NEEDSFLQKS SRGTGAVHQS NDSLPQSARQ SLDPDGLVNG  540
QHPGKLTSDV SNSKANRRPL NNKEEVDDLG LPLEDSEDDD YDPAGPDSDT DIEKKQSSSN  600
ESDYSSASDD FCGEIAKSCG REGVSSGAKA GGHPTNDLKG TAVRTNGAIS NLPSKDPQMD  660
KDVVSPVSGR RQDQSLDRKK LYDEAYREAP SDLSDGEDWS GKCATERDSE KQSEAGSFIR  720
RRTGAVRQSN ESTADNARQS LHRVNGQHTE ELLTSDGSSS TVQRRQFGPI INQRLHEHFE  780
TDQYPKRAVK ESIANELGLT FQQVTKWFET RRHKTRVATN KNDSRVKNRS IKGNQSSVAA  840
HIEVTDPKEL GKKLNVCKNG AANDVMASGI LNGGIKQDSP LKQDTSGGLG THVSPPGSSP  900
KGDPIENHGN NTSSRCVGRP KDGYTENVVL ALPVVDDRTK KAAMRELKKR KTGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	939	949	KKAAMRELKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G057900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010231157.1	0.0	homeobox protein HOX1A isoform X1
Refseq	XP_014754573.1	0.0	homeobox protein HOX1A isoform X1
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A0Q3IY47	0.0	A0A0Q3IY47_BRADI; Uncharacterized protein
STRING	BRADI2G19610.2	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-79	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	Brast08G057900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]