PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G042200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 441aa    MW: 49507.3 Da    PI: 9.9941
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G042200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.7e-07132174346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          W+ eE ++l ++++++  + +  Ia ++++ R+ +++ksr+++
  Brast08G042200.1.p 132 TWSREETDQLFELCERFDLR-FIVIADRFPTSRSVEDLKSRYYS 174
                         7*******************.*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162823.8E-31105179IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007173.8E-7129178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-5131177IPR009057Homeodomain-like
SuperFamilySSF466897.18E-6132176IPR009057Homeodomain-like
CDDcd116581.82E-18133175No hitNo description
PfamPF054997.2E-7291373IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDAKDILGLP KTPFQSTQEK KPRPPKEPQR KPDGVSREVY ALTGGVGMAP LMPTIEASHL  60
KRRPAVEKEK IAWQWLPFTS SARTDSLQLY HWVRVANGVP PTGDYEFAKY NTKVDVLKYT  120
EEEYEKYLTE PTWSREETDQ LFELCERFDL RFIVIADRFP TSRSVEDLKS RYYSVTRALL  180
IARARSFDEV AGNPLVKETF NAAHEIERKR ALSALLSQTK QHERKDAEVL AEAKRIMESR  240
ASKNLEEAGA QASFHNAAAP ADGVSLSNSH PLSTATHPAL AANSTIPDSL RMLKVYLRSH  300
ALDQMVQTVS ASAGLRMIKR VDQTLQDLGV NLKPKVPTKA VCAEHLELRN EILTLLNLQK  360
QLQNKEAEVL ANRESSFTEA PGTPKRSNRD VDRPFVPDTT GFGGDRTVKR DHKRKSTGRF  420
MDAPPSPPQS KRPRKLKASD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A9e-20104184488DNA methyltransferase 1-associated protein 1
4iej_A9e-20104184488DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G042200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0974020.0FP097402.1 Phyllostachys edulis cDNA clone: bphylf054o08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567993.10.0SWR1-complex protein 4
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLI1HH210.0I1HH21_BRADI; Uncharacterized protein
STRINGBRADI2G18250.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61531216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-150MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]