PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G036100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family RAV
Protein Properties Length: 429aa    MW: 44878.3 Da    PI: 10.0913
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G036100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.5e-1399147155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      r  r++lg+f  + eAa+a++aa+++++g
  Brast08G036100.1.p  99 SRYKGVVPQP-NGRWGAQIYE------RhSRVWLGTFTGEAEAARAYDAAAQRFRG 147
                         78****9888.8*********......44**********99*************98 PP
2B391.46.8e-29236342187
                         EEEE-..-HHHHTT-EE--HHH.HTT....................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                         f+k+ tpsdv+k++rlv+pk++ae+h                     +++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+
  Brast08G036100.1.p 236 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlgsssgaavvsgsgsgASESCKGVLLNFEDGAGKVWRFRYSYWNSSQSYVLTKGWSRFVKE 326
                         89****************************9999888888877765333348999************************************ PP

                         HT--TT-EEEEEE-SS CS
                  B3  72 ngLkegDfvvFkldgr 87 
                         +gL++gD v F+++ +
  Brast08G036100.1.p 327 KGLCAGDAVGFYRSAS 342
                         ************6643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-1699155IPR016177DNA-binding domain
CDDcd000186.82E-1299155No hitNo description
PfamPF008472.3E-899147IPR001471AP2/ERF domain
PROSITE profilePS5103219.73100155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-19100155IPR001471AP2/ERF domain
SMARTSM003809.2E-25100161IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-39226364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-27232343IPR015300DNA-binding pseudobarrel domain
CDDcd100175.19E-25234344No hitNo description
PfamPF023621.4E-25236342IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829236358IPR003340B3 DNA binding domain
SMARTSM010194.1E-21236348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDSSSCLLDE SSSGGSASMA TGKIKSPPSS PSPAPPPTKK NPPPNPLHRA GSGGAATSAV  60
MDDAAAEEHG AQEADSAAGR RIAMAAAAGA GAGNKLPSSR YKGVVPQPNG RWGAQIYERH  120
SRVWLGTFTG EAEAARAYDA AAQRFRGRDA VTNFRPLAEQ HGGGAAELRF LASHSKLEVV  180
DMLRKHTYLD ELALFAAAAA ASSSSSPPAP PDHFLSSSSS PAPAAAQAQK AKEHLFDKTV  240
TPSDVGKLNR LVIPKQHAEK HFPLQLGSSS GAAVVSGSGS GASESCKGVL LNFEDGAGKV  300
WRFRYSYWNS SQSYVLTKGW SRFVKEKGLC AGDAVGFYRS ASGGSGNQQQ LFIDCKARTK  360
TTTSEPRPAT VVRAVRLFGV DLLAAAPAPE LDTKTARKRP RVDGADKTPP PDPTHAVFKR  420
RCIDFALT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4723335911118DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G036100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0982982e-91FP098298.1 Phyllostachys edulis cDNA clone: bphyem207d01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565959.11e-177AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-142Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLI1HGT61e-176I1HGT6_BRADI; Uncharacterized protein
STRINGBRADI2G17610.11e-177(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-89related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]