PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G032900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 301aa    MW: 31842.7 Da    PI: 7.1887
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G032900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.1e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEde+l ++v+ +G+g +W + +++ g++R++k+c++rw++yl
  Brast08G032900.1.p 14 RGPWSPEEDEQLRRYVRAHGSGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding32.81.6e-1071111446
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          T++Ed  +  +    G++ W+ Ia++++ gRt++++k++w++
  Brast08G032900.1.p  71 YTAQEDRVICSLYGSIGSR-WSVIASRLP-GRTDNDVKNYWNT 111
                         6999***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.714966IPR017930Myb domain
SuperFamilySSF466893.67E-2611109IPR009057Homeodomain-like
SMARTSM007179.6E-131364IPR001005SANT/Myb domain
PfamPF002496.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-231569IPR009057Homeodomain-like
CDDcd001677.27E-101662No hitNo description
PROSITE profilePS5129412.92267117IPR017930Myb domain
SMARTSM007171.8E-967115IPR001005SANT/Myb domain
PfamPF002493.4E-970111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2170116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDEQLRRYVR AHGSGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG YTAQEDRVIC SLYGSIGSRW SVIASRLPGR TDNDVKNYWN TKLKKKAVAM  120
AMAAGAFSAP QSQRASPPSA LSPAASGSSS SFSLDATGSS AAGDAFFAAA MDQQPWPPQG  180
LVTHYDARTE PAALDVVVSG AGAGWANGAM DDADVFLPEL GAGGEQASML FPYGDLLFSG  240
LLQADQDQYK AAAADGAVEL LASACGHFLP GSNMAETYNW ADHAAHAVPQ QQGLCMQHLN  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G032900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3581611e-127AK358161.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1070D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565943.11e-135transcription factor RAX1
TrEMBLI1HGP81e-133I1HGP8_BRADI; Uncharacterized protein
STRINGBRADI2G17280.11e-134(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-64myb domain protein 36