PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G032000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 302aa MW: 34453.6 Da PI: 9.5565

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G032000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.1e-08	57	118	2	46
SSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 ++W++ Ede lv a ++ Wk Ia++ + + +++ qck++w k Brast08G032000.1.p 57 KNWSKKEDEWLVSAWLNNSNDpidgnskksdhFWKQIAQEYNmhapqeQXKSATQCKNHWTK 118 58**********************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-5	55	118	IPR009057	Homeodomain-like
SMART	SM00717	0.0023	55	122	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-5	57	118	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.98	58	120	IPR017877	Myb-like domain
Pfam	PF14303	2.8E-6	162	284	IPR029466	No apical meristem-associated, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MAFFGVAGGS GSRDGDNSPV GGSGTPVSAV YRVEDPANNE EGSESXPDEH VKRGKGKNWS 60 KKEDEWLVSA WLNNSNDPID GNSKKSDHFW KQIAQEYNMH APQEQXKSAT QCKNHWTKNT 120 XKVSKFNACY NELKSTYASG QSEDQLMEKV REKYKVVXKT KRPFPLEHWW KMVKKQPKWR 180 RLYTLEEMNK RNKLDAAGAY TKAQRKGKSK CSTGTLSNEN VEQFNNLQVR KSITAEKMAT 240 AALLYAENEK ERIEAEKEKT KVAKLDKYLN LIEKDTSDFT DDEKLRHERL VGYLARELGL 300 D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G032000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024316450.1	0.0	glutathione S-transferase T3-like
TrEMBL	A0A0Q3J4F9	0.0	A0A0Q3J4F9_BRADI; Uncharacterized protein
STRING	BRADI3G03310.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP449	6	10

Link Out ? help Back to Top
Phytozome	Brast08G032000.1.p