PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G025500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1836aa MW: 204157 Da PI: 5.0165

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G025500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.2e-19	47	101	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yp++++r eLA++l+Lt+rq ++WF+ rR k++k Brast08G025500.1.p 47 KRVMKTPYQLEVLEKTYADDPYPNEATRVELAARLSLTDRQLQMWFCHRRLKDRK 101 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-18	32	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-17	32	102	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	42	102	IPR001356	Homeobox domain
SMART	SM00389	4.0E-18	44	106	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-16	47	101	IPR001356	Homeobox domain
CDD	cd00086	1.38E-15	47	102	No hit	No description
PROSITE profile	PS50827	15.292	593	652	IPR018501	DDT domain
SMART	SM00571	3.0E-15	593	652	IPR018501	DDT domain
Pfam	PF02791	3.6E-16	595	649	IPR018501	DDT domain
Pfam	PF05066	2.5E-15	774	841	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.8E-9	996	1038	IPR028942	WHIM1 domain
Pfam	PF15613	3.5E-13	1173	1245	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1836 aa Download sequence Send to blast
MDSSGDGGDE GAGAAPGSPA PAPSSAPAAA AAGGAAASGS SSRPTAKRVM KTPYQLEVLE 60 KTYADDPYPN EATRVELAAR LSLTDRQLQM WFCHRRLKDR KQPAKQEEEV AVPVAVSPSL 120 PQPSLPNSKL APGSSSTYSE QLLPCSQRGR GRSSAVPRIS ASEIARRYYE PHQVMLPPLA 180 AVQPTQGAHQ MIDYVQQLIG KPLREDGPVL GVHFDPLPPG AFGAPIVQEQ RKQPFRSYET 240 KASVFLPTID PSVPSTVTRK RKSMDGNSSH LGSRAVREYQ FLPEQPSTYE RPSQQRFYDA 300 PTEASNSRIS SVSTGSRFLH GAEQEPSYAF HGQISGPSHL SQHGKPLIFP SGSTDYETAS 360 SYINVSSAPM EGQFGIPQVA GFETPLACSE GVDYRCEDAY RLDKKRKHKE EAKIGKEVDV 420 HEKRIRKELE KQDLLKRKKE EQMRREMERH GREKRKEEEK FMREKQREEE RLQKEQWREH 480 KRKEKFLLKQ SLRDEKLRQK EELRKEKEAA RQKAANEKAT ARRIAREYLE LMEDERLELM 540 ELVSRSKGLP SMLSLDSDTL QQLDSFRGML TQFPNEVVRL KIPFSVKPWM NSESNIGSLL 600 MVWKFFFTFA DVLGLPSFTL DEFVQSLHDY DSRLLAELHV ALLKSIIKDI ENVARTSSDA 660 FGVNQSSSAN PGGGHPQIVE GAYAWGFNIL TWQRHLTYHT WPEILRQFGL SAGFGPQLKK 720 RSAEDVYCHD DNEGRNTQDV ISTLRNGSAA LKSAALMKER GYTNRRSRHR LTPGTVKFAA 780 FHVLSLEGDK GLSILEVAEK IQKSGLRDLT TSKTPEASIS AALSRDTKLF ERTAPSTYCV 840 KTPYRKDPAD SEAVLSAARE KIKVFQNVLS ECEEVEKDVD DAERGDDDSE CDDADDDPDG 900 DEVNVEEKNA EVSVLRAQDG GIPTLPCDIN DELNSVGNTS MPSSPHNRSQ SNLLGMLDET 960 TAASTSSDPP IGASSAYHEV ATDSAQDTEI DESNQGESWV EGLAEGDYGD LSVEERLDAL 1020 VALVNVATEG NSMRAILEER LEAANALKKQ MWAESQLDKR RSREDFAGKI QHDSCTGFKA 1080 IADQENSVGE CNLTPVQNLT KENDGNTSSV NNDLLVDQHS QLNAGNMVHE VNGLSRESNP 1140 ESLSVQQYAS SDKTRSQLKS FIGHKAEQLY VYRSLPLGQD RRRNRYWQFS ASASPNDPGS 1200 GRIFFESRDG YWRLIDSAEA FDALVASLDT RGIRESHLHS MLQNIESTFK DAIGRRKCAT 1260 IEHPAGMILR NGSSEIISPN HSNEFGSPCS TLSGVVCDNA MVYSDSFKIE LGRNDLEKVA 1320 ILKRASMFLK WMWRERNNHQ STCAMKYGKK RCSELIQPCD FCYQIYPTEE MHCSSCHKSF 1380 KSIQSLSEHA SQCDEKQRTD PDLKMQISDD SIPIRLRLLK LLLASIEVSV PAEALLPFWT 1440 DGYRKSWGLK LYSTSSTKEV FQMLTVLEGA IRRNYLSSNF KTTAELLNST ARDNSNQNFV 1500 ACSGSADVLP WVPNTAAAVT LRLLDLDSAL SYTSDQKAVL TKEQESPDSM KFPSRCLAVK 1560 NKQEMESVGA TGLDQRDEAW LTPSTGHRGR GRGGRGRGRG GRSRSRGGRV PRGIGSSPKI 1620 EFRDDNNVSL KVPYKQAPRG RGRGRGRGRG LRTVRPRQPT EHGSGSVPKA NLLGSFRMLS 1680 NAKPTTVHSP QSSGAEEWGF ERRAYVEDDE SNSVSQSEES EENEENGEPM DEDYNEQLPD 1740 YSRDNSGSSP LQMMDDGSEN DEEDDEEVED DGVDYDAEDP LDEDNNDAEM SGNDELHNDE 1800 DDDDNDGDDA GGVQDEVENT DDDEDGASDS SEYSE*

Sequence ? help Back to Top

Protein Sequence Length: 1836 aa Download sequence Send to blast

MDSSGDGGDE GAGAAPGSPA PAPSSAPAAA AAGGAAASGS SSRPTAKRVM KTPYQLEVLE  60
KTYADDPYPN EATRVELAAR LSLTDRQLQM WFCHRRLKDR KQPAKQEEEV AVPVAVSPSL  120
PQPSLPNSKL APGSSSTYSE QLLPCSQRGR GRSSAVPRIS ASEIARRYYE PHQVMLPPLA  180
AVQPTQGAHQ MIDYVQQLIG KPLREDGPVL GVHFDPLPPG AFGAPIVQEQ RKQPFRSYET  240
KASVFLPTID PSVPSTVTRK RKSMDGNSSH LGSRAVREYQ FLPEQPSTYE RPSQQRFYDA  300
PTEASNSRIS SVSTGSRFLH GAEQEPSYAF HGQISGPSHL SQHGKPLIFP SGSTDYETAS  360
SYINVSSAPM EGQFGIPQVA GFETPLACSE GVDYRCEDAY RLDKKRKHKE EAKIGKEVDV  420
HEKRIRKELE KQDLLKRKKE EQMRREMERH GREKRKEEEK FMREKQREEE RLQKEQWREH  480
KRKEKFLLKQ SLRDEKLRQK EELRKEKEAA RQKAANEKAT ARRIAREYLE LMEDERLELM  540
ELVSRSKGLP SMLSLDSDTL QQLDSFRGML TQFPNEVVRL KIPFSVKPWM NSESNIGSLL  600
MVWKFFFTFA DVLGLPSFTL DEFVQSLHDY DSRLLAELHV ALLKSIIKDI ENVARTSSDA  660
FGVNQSSSAN PGGGHPQIVE GAYAWGFNIL TWQRHLTYHT WPEILRQFGL SAGFGPQLKK  720
RSAEDVYCHD DNEGRNTQDV ISTLRNGSAA LKSAALMKER GYTNRRSRHR LTPGTVKFAA  780
FHVLSLEGDK GLSILEVAEK IQKSGLRDLT TSKTPEASIS AALSRDTKLF ERTAPSTYCV  840
KTPYRKDPAD SEAVLSAARE KIKVFQNVLS ECEEVEKDVD DAERGDDDSE CDDADDDPDG  900
DEVNVEEKNA EVSVLRAQDG GIPTLPCDIN DELNSVGNTS MPSSPHNRSQ SNLLGMLDET  960
TAASTSSDPP IGASSAYHEV ATDSAQDTEI DESNQGESWV EGLAEGDYGD LSVEERLDAL  1020
VALVNVATEG NSMRAILEER LEAANALKKQ MWAESQLDKR RSREDFAGKI QHDSCTGFKA  1080
IADQENSVGE CNLTPVQNLT KENDGNTSSV NNDLLVDQHS QLNAGNMVHE VNGLSRESNP  1140
ESLSVQQYAS SDKTRSQLKS FIGHKAEQLY VYRSLPLGQD RRRNRYWQFS ASASPNDPGS  1200
GRIFFESRDG YWRLIDSAEA FDALVASLDT RGIRESHLHS MLQNIESTFK DAIGRRKCAT  1260
IEHPAGMILR NGSSEIISPN HSNEFGSPCS TLSGVVCDNA MVYSDSFKIE LGRNDLEKVA  1320
ILKRASMFLK WMWRERNNHQ STCAMKYGKK RCSELIQPCD FCYQIYPTEE MHCSSCHKSF  1380
KSIQSLSEHA SQCDEKQRTD PDLKMQISDD SIPIRLRLLK LLLASIEVSV PAEALLPFWT  1440
DGYRKSWGLK LYSTSSTKEV FQMLTVLEGA IRRNYLSSNF KTTAELLNST ARDNSNQNFV  1500
ACSGSADVLP WVPNTAAAVT LRLLDLDSAL SYTSDQKAVL TKEQESPDSM KFPSRCLAVK  1560
NKQEMESVGA TGLDQRDEAW LTPSTGHRGR GRGGRGRGRG GRSRSRGGRV PRGIGSSPKI  1620
EFRDDNNVSL KVPYKQAPRG RGRGRGRGRG LRTVRPRQPT EHGSGSVPKA NLLGSFRMLS  1680
NAKPTTVHSP QSSGAEEWGF ERRAYVEDDE SNSVSQSEES EENEENGEPM DEDYNEQLPD  1740
YSRDNSGSSP LQMMDDGSEN DEEDDEEVED DGVDYDAEDP LDEDNNDAEM SGNDELHNDE  1800
DDDDNDGDDA GGVQDEVENT DDDEDGASDS SEYSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	262	TRKRKS
2	435	455	KRKKEEQMRREMERHGREKRK
3	1638	1648	RGRGRGRGRGR
4	1640	1649	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G025500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565920.1	0.0	homeobox-DDT domain protein RLT2 isoform X2
TrEMBL	A0A0Q3FZZ5	0.0	A0A0Q3FZZ5_BRADI; Uncharacterized protein
STRING	BRADI2G16647.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Brast08G025500.1.p