PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G000500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 296aa    MW: 31637.7 Da    PI: 4.733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G000500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011272293323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         C+ C+k+F++   L++H +  H
  Brast08G000500.1.p 272 CKSCSKTFNSETALQSHSKAkH 293
                         *****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.512270295IPR007087Zinc finger, C2H2
PROSITE patternPS000280272293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAMEFWGLEL KPGQTVKVEP EAEHFLHLSQ GALGESKKDD KATMFVKIDG KKLAIGTLST  60
DKFPQIQFDL VFEKDFELSH SSKSSSVFFS GYKVFQPAEG DEMDFDSEGS EESEEEEEEA  120
IIPVTKENGK AEGKQKQVKI DAGSSKAKPV LKAVGNKKGG EESSDDESDE SDDDIADLSD  180
DDSGSDDGTS EESDEEEEEE TPKKSTGKKR AAETVLKTPA SDKKAKAATP SGHKTGDKKG  240
AVHVATPHPA KKASKTPATS DKSPKSGGSV ACKSCSKTFN SETALQSHSK AKHDK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G000500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567768.11e-153histone deacetylase HDT2 isoform X1
SwissprotQ9M4U55e-90HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLI1HFN91e-152I1HFN9_BRADI; Uncharacterized protein
STRINGBRADI2G14120.11e-152(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-20histone deacetylase 3