PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G240900.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 409aa    MW: 45460.2 Da    PI: 6.5135
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G240900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-173377147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Brast07G240900.2.p 33 REKWTEEEHERFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 77
                        789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.68E-162781IPR009057Homeodomain-like
PROSITE profilePS5129422.1782882IPR017930Myb domain
TIGRFAMsTIGR015572.7E-163180IPR006447Myb domain, plants
SMARTSM007173.8E-143280IPR001005SANT/Myb domain
PfamPF002491.1E-143376IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-103373IPR009057Homeodomain-like
CDDcd001672.64E-113578No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MMDDSIAMQS KEEGMGDEHP VKARKPYTIT KQREKWTEEE HERFLEALKL YGRSWRQIQE  60
HIGTKTAVQI RSHAQKFFSK VVREPGAKIE IEIPPPRPKR KPLHPYPRKR ANSCNGANSA  120
AGQPKLDPLS SSSGSDQENG SPVSVLSAMQ TDAFESSMSN PSTQCNSPAT SDDENNVPPL  180
MSGDENVPCQ QTGVDQPQKE IHQDNKDTGM SEEDSSDEVQ ETSLKLFGKT VVITDPRKRC  240
SPDTGHENDE QNSQSPNQRT SQSPPVGEVP AYTATNGWLL PYNSFPLHFC ESADTRMAPL  300
HIYWPYYGFP IGHPRGGTNM VAHKEATNEN DTAKSHPVES SSDSEDNAQT ASKKREVTEP  360
HGRIHFSWST PNFELKPSTN SAFVRVKPNS GGNQPARGFM PYKRCRVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G240900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563237.10.0protein REVEILLE 1 isoform X1
TrEMBLI1GV560.0I1GV56_BRADI; Uncharacterized protein
STRINGBRADI1G29680.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.18e-36MYB_related family protein