PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G240900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 442aa    MW: 48833.9 Da    PI: 6.1619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G240900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-1766110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Brast07G240900.1.p  66 REKWTEEEHERFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 110
                         789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.43E-1660114IPR009057Homeodomain-like
PROSITE profilePS5129422.17861115IPR017930Myb domain
TIGRFAMsTIGR015573.0E-1664113IPR006447Myb domain, plants
SMARTSM007173.8E-1465113IPR001005SANT/Myb domain
PfamPF002491.2E-1466109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-1066106IPR009057Homeodomain-like
CDDcd001673.13E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MASSMALAEE KDGLDSSCLP INNGQSPDVV KSPMMDDSIA MQSKEEGMGD EHPVKARKPY  60
TITKQREKWT EEEHERFLEA LKLYGRSWRQ IQEHIGTKTA VQIRSHAQKF FSKVVREPGA  120
KIEIEIPPPR PKRKPLHPYP RKRANSCNGA NSAAGQPKLD PLSSSSGSDQ ENGSPVSVLS  180
AMQTDAFESS MSNPSTQCNS PATSDDENNV PPLMSGDENV PCQQTGVDQP QKEIHQDNKD  240
TGMSEEDSSD EVQETSLKLF GKTVVITDPR KRCSPDTGHE NDEQNSQSPN QRTSQSPPVG  300
EVPAYTATNG WLLPYNSFPL HFCESADTRM APLHIYWPYY GFPIGHPRGG TNMVAHKEAT  360
NENDTAKSHP VESSSDSEDN AQTASKKREV TEPHGRIHFS WSTPNFELKP STNSAFVRVK  420
PNSGGNQPAR GFMPYKRCRV E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G240900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563237.10.0protein REVEILLE 1 isoform X1
TrEMBLI1GV560.0I1GV56_BRADI; Uncharacterized protein
STRINGBRADI1G29680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-35MYB_related family protein