PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G239300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 20627.3 Da PI: 7.9386 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 82 | 103 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C ++F+++ + H+r H Brast07G239300.1.p 82 RCPVCERTFRTPKAAHGHMRAH 103 7*******************98 PP | |||||||
2 | zf-C2H2 | 15.2 | 6.3e-05 | 127 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +Cg+ F+++ +L H +H Brast07G239300.1.p 127 YECAHCGTQFPTRQSLGGHRASH 149 99**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.203 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.044 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.18E-7 | 82 | 149 | No hit | No description |
Pfam | PF13894 | 0.0011 | 82 | 103 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.9E-8 | 126 | 151 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.907 | 127 | 151 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.078 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MSSSTLVMSG AGHLVSSGAG AGGGGDDPSN NWPYKLPSSH ALDAAAAVLS NITIKKKKKL 60 QKKKPVAAGA GEEEGPLLIQ IRCPVCERTF RTPKAAHGHM RAHPGRAWRG MDPAPPPPPA 120 AAAGGRYECA HCGTQFPTRQ SLGGHRASHS GVPGCSELSR IMMQQQQAPR NVVVRPFDLN 180 ELPAPETEEE EEEEE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 63 | KKKKKLQKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G239300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I1GV76 | 2e-68 | I1GV76_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G29820.1 | 3e-69 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 7e-10 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Brast07G239300.1.p |