PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G239200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 20801.7 Da PI: 9.7037 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 52 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C +Cg sF+++ +rH+ + H Brast07G239200.1.p 52 FECAICGSSFRTPKACRRHLVRsH 75 89*****************99888 PP | |||||||
2 | zf-C2H2 | 16 | 3.5e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F + L H ++H Brast07G239200.1.p 94 HVCKRCGKRFVTLRALAGHRSNH 116 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.15E-5 | 51 | 116 | No hit | No description |
PROSITE profile | PS50157 | 9.349 | 52 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.027 | 52 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 54 | 75 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.1E-7 | 93 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.18 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MDAAPSYFPR LSLSVSGGGG GGDEPPRYQP WRVKSAHELD EAGFIDPLQT CFECAICGSS 60 FRTPKACRRH LVRSHKGGLR PGAPLPPKPL VLRHVCKRCG KRFVTLRALA GHRSNHKGKL 120 GCAWLSKGKQ PAMAARARAP PATATAGTSA AATASTTATT VVVRDFDLNE LPAPEEEEEL 180 QEKQQEKDPA APAAN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G239200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0Q3NGZ5 | 1e-55 | A0A0Q3NGZ5_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP49853 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G239200.1.p |