PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G238700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 33456.9 Da PI: 8.2862 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.1 | 4.8e-42 | 6 | 148 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgk.....rknra 77 pGfrFhPt+eel+ +yLk+ ++g+kl++ ++i++v++y+++PwdLp+ + + +++ewyfF++rd + ++ r++r+ Brast07G238700.1.p 6 PGFRFHPTEEELLEFYLKQAAHGRKLKF-DIIPTVHLYRHDPWDLPAlagdiiqhgssSSSCSSREWYFFVPRDGGRRLNQqqaacRPSRT 95 9**************************9.99***************6689988776543333778*******99655522223455999** PP NAM 78 tksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 t++g+Wkatg+d++v + ++l+glkktLv+y+grap+g+ktdWvm+eyrl Brast07G238700.1.p 96 TERGFWKATGSDRAVRCGadPKRLIGLKKTLVYYQGRAPRGSKTDWVMNEYRL 148 ****************97666778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 48.458 | 4 | 178 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-45 | 5 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-23 | 6 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MELELPGFRF HPTEEELLEF YLKQAAHGRK LKFDIIPTVH LYRHDPWDLP ALAGDIIQHG 60 SSSSSCSSRE WYFFVPRDGG RRLNQQQAAC RPSRTTERGF WKATGSDRAV RCGADPKRLI 120 GLKKTLVYYQ GRAPRGSKTD WVMNEYRLPE HQGAMARGGG GKLQQDHQEL VLCKVYRKAV 180 SLKELEQRVA MEELARSSSA ASSHCTGSPD ATGSMSSDVV QYEAAHHGGA GVGVKIEEAA 240 AAAVARPAAM KLPELETTRP EWMSQPQQDP FLLASSQLRS PWMMESFCLS PCYQSSLLNF 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-40 | 2 | 178 | 12 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G238700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967633 | 2e-53 | EU967633.1 Zea mays clone 304978 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752297.1 | 1e-175 | NAC domain-containing protein 22 | ||||
Swissprot | Q10S65 | 5e-88 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | I1GV81 | 1e-174 | I1GV81_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G29857.1 | 1e-175 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 3e-66 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G238700.1.p |
Publications ? help Back to Top | |||
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