PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G238500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 167aa    MW: 18770.2 Da    PI: 5.6414
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G238500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-055073123
                        EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                        ++C +C+++F++    +rHi + H
  Brast07G238500.1.p 50 FECAICDQTFTTVKAIRRHILRsH 73
                        89******************9988 PP
2zf-C2H214.88e-0587107121
                         EEETTTTEEESSHHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                         y C++C ++F ++  L rH +
  Brast07G238500.1.p  87 YMCEHCRERFVTWQALGRHRS 107
                         89*****************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-44873IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-748106No hitNo description
PfamPF138944.7E-45073No hitNo description
SMARTSM003550.00545073IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5125078IPR007087Zinc finger, C2H2
PROSITE patternPS0002805273IPR007087Zinc finger, C2H2
SMARTSM003554187107IPR015880Zinc finger, C2H2-like
PfamPF139120.008687106IPR007087Zinc finger, C2H2
PROSITE profilePS501579.03787114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAATRYFPRL TLSSSSGAGG GDEPPRYFPW RVKSVHEIDE GIIDPLQKSF ECAICDQTFT  60
TVKAIRRHIL RSHPEADPVP PPPIRRYMCE HCRERFVTWQ ALGRHRSIQF GKTECSLLSE  120
QERAQDILNM AMTAAKAPPA VVRDFDLNEP APEEEQEEND PAPPAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G238500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3KQH72e-57A0A0Q3KQH7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3725723