PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G234600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 279aa    MW: 29537.8 Da    PI: 8.636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G234600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161964147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg+W++eEd+ l   v  +G ++W++I r ++ gR++k+c++rw + 
  Brast07G234600.1.p 19 RGPWSPEEDDVLRAMVGVHGARNWTAIGRGVP-GRSGKSCRLRWCNQ 64
                        89******************************.***********985 PP
2Myb_DNA-binding46.67.7e-1571114145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         r ++T+ Ed  ++ a+++lG++ W++Iar +g gRt++ +k++w+
  Brast07G234600.1.p  71 RRPFTAAEDAAIAAAHARLGNR-WAAIARALGGGRTDNAVKNHWN 114
                         679*******************.*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.0191469IPR017930Myb domain
SuperFamilySSF466892.06E-2517113IPR009057Homeodomain-like
SMARTSM007176.0E-141867IPR001005SANT/Myb domain
PfamPF002495.0E-151964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-222071IPR009057Homeodomain-like
CDDcd001675.44E-132163No hitNo description
SMARTSM007174.4E-1370119IPR001005SANT/Myb domain
PfamPF002494.2E-1271114IPR001005SANT/Myb domain
PROSITE profilePS5129416.41471121IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-1972121IPR009057Homeodomain-like
CDDcd001674.68E-491114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGGSDHHHQP GASGEERTRG PWSPEEDDVL RAMVGVHGAR NWTAIGRGVP GRSGKSCRLR  60
WCNQLSPRVE RRPFTAAEDA AIAAAHARLG NRWAAIARAL GGGRTDNAVK NHWNCSLKRR  120
LLKRVSASPD GPSGSGSGSG SDRSELSHGG GGVLGGRMGC RPVAAAGDCA TSRCRRGEVE  180
EEDDGPLTSL SLSLPGMAQD QDQGPPSRDF FQQPPSSSPA AASRPFISAE FAAAMQEMIR  240
GEVQRYLSGD DLPLPMSGFS SRSGATNPME WRTQQWLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31181216108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G234600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794294e-88HF679429.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB23 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239722.11e-115transcription factor MYB44
TrEMBLI1GVC21e-114I1GVC2_BRADI; Uncharacterized protein
STRINGBRADI1G30252.11e-114(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-41myb domain protein 70