PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G231800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 84aa MW: 9242.58 Da PI: 7.5138 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80 | 1.7e-25 | 17 | 67 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rq tfskR g+lKKA+ELSvLCd+e+ +iifs++g+lye++s Brast07G231800.1.p 17 KQIENPASRQETFSKRSGGLLKKAYELSVLCDVEATLIIFSPRGRLYEFAS 67 78***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.207 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-23 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.6E-22 | 15 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-23 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-23 | 19 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-23 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-23 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MDDLHDAGLI AGEDALKQIE NPASRQETFS KRSGGLLKKA YELSVLCDVE ATLIIFSPRG 60 RLYEFASAST VKKIPYHLIS RFN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G231800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469308 | 8e-50 | KF469308.1 Brachypodium distachyon MADS-box transcription factor 13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630979.1 | 1e-25 | MADS-box transcription factor 50 | ||||
Refseq | XP_025880188.1 | 1e-25 | MADS-box transcription factor 50 | ||||
Swissprot | Q9XJ60 | 1e-26 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A0Q3K8G3 | 7e-28 | A0A0Q3K8G3_BRADI; Uncharacterized protein | ||||
STRING | OGLUM03G01750.2 | 6e-25 | (Oryza glumipatula) | ||||
STRING | OS03T0122600-01 | 6e-25 | (Oryza sativa) | ||||
STRING | ORGLA03G0015400.1 | 5e-25 | (Oryza glaberrima) | ||||
STRING | Traes_4DL_5633C0561.1 | 6e-26 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 2e-26 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G231800.1.p |