PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G229200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 469aa    MW: 52325.6 Da    PI: 9.3677
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G229200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.34.7e-20187240155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +pr+ Wt+eLHe+Fv a +qL G+  A+P +i e+m+v+ + +  v+SHLQk+R 
  Brast07G229200.1.p 187 RPRVTWTTELHEKFVAAFNQL-GKADAIPTRICEMMNVDYIDRLAVASHLQKHRG 240
                         59*******************.9999***************************95 PP
2Response_reg54.37.5e-19131211109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH.HHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell.kekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl +d ++  +++l +al + +y +v+ + d++ al++l ++k+ ++l++   +mp+m+G+ell+ i+ +  ++p+i+++a+g+ e + + 
  Brast07G229200.1.p  13 VLAIDANRESLMALVSALLQCDY-NVTPVMDAKMALQTLwEAKEpFELVIGEADMPDMNGVELLRYIAVQT-RIPVIAISANGDTEAVMKG 101
                         67889999999999999999***.888888888888877443337**********************9988.9****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +k G  d++ Kp+  ++l++
  Brast07G229200.1.p 102 IKDGLCDYFLKPVRVDQLRN 121
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.39E-2710131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.6E-2910133No hitNo description
SMARTSM004484.7E-1711123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.93112127IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-1513122IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.77E-1914126No hitNo description
Gene3DG3DSA:1.10.10.602.2E-20185245IPR009057Homeodomain-like
SuperFamilySSF466892.15E-14185244IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-16188239IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MASREEFWAG MRVLAIDANR ESLMALVSAL LQCDYNVTPV MDAKMALQTL WEAKEPFELV  60
IGEADMPDMN GVELLRYIAV QTRIPVIAIS ANGDTEAVMK GIKDGLCDYF LKPVRVDQLR  120
NIWQHVVRRR PEAWNDEGDA YQRVQSAGIA EGGPGPKSTS LKNSERFIYG DADADSDENM  180
GLKPSRRPRV TWTTELHEKF VAAFNQLGKA DAIPTRICEM MNVDYIDRLA VASHLQKHRG  240
YLRRISDPKA RPLRRWNSSM SNLESSRHYD ENRVRRPSSV VASSSSKSPF TTRPIQPRKN  300
LGKKKALKHG ASSRKSKDHA KALRGILLNT NQGKACSHLD YYFENMPDEE MLQPVNQLPV  360
QPPELVNHQP SVLMNAPAFF QKQDAPATNL VGALGDASKY FPNLVGNCNN PWQTAFPSMY  420
PGPSQVNIPQ ISQLTSFAGT PSSQMQMVTN EMPNPMAAIS ISNTPRRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14186246464ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G229200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311819.15e-97two-component response regulator ORR24
TrEMBLA0A0Q3NHB50.0A0A0Q3NHB5_BRADI; Uncharacterized protein
STRINGBRADI5G12160.11e-137(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4985622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.19e-60response regulator 12