PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G216700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 351aa MW: 37778.8 Da PI: 7.2911

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G216700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.8e-33	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Brast07G216700.1.p 48 KPRLRWTVELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.33	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-32	45	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	47	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.1E-24	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	4.8E-8	50	100	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-24	142	188	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MFPAATVCSK KPGAVSSSSP NDRPCGVVHQ GQQQGGGDSG LVLTTDPKPR LRWTVELHDR 60 FVDAVAQLGG PDKATPKTIM RVMGVKGLTL YHLKSHLQKF RLGKQHKEFG DHSSVKDAME 120 MQRNAASSSG MMGRSMNDRS AHMNEALRMQ VEVQRRLHEQ LEVQKHLQMR VEAQGKYMQS 180 ILEKAYQTLA SGDCATWPAA GYRSLGGTSQ AAALEAGSSM SFQDLTLYGS GSSHLDLQQQ 240 MEIRPTMAPM DSFLAFNESC IGRRSPADGG GSCYSRAAGK SPMMMMWAGD DQQAKSCGTD 300 GDDQQLLQMA PASTMMMEAG GVDAMDPIMS MSGDSLGSNK GFDRGPELQA *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MFPAATVCSK KPGAVSSSSP NDRPCGVVHQ GQQQGGGDSG LVLTTDPKPR LRWTVELHDR  60
FVDAVAQLGG PDKATPKTIM RVMGVKGLTL YHLKSHLQKF RLGKQHKEFG DHSSVKDAME  120
MQRNAASSSG MMGRSMNDRS AHMNEALRMQ VEVQRRLHEQ LEVQKHLQMR VEAQGKYMQS  180
ILEKAYQTLA SGDCATWPAA GYRSLGGTSQ AAALEAGSSM SFQDLTLYGS GSSHLDLQQQ  240
MEIRPTMAPM DSFLAFNESC IGRRSPADGG GSCYSRAAGK SPMMMMWAGD DQQAKSCGTD  300
GDDQQLLQMA PASTMMMEAG GVDAMDPIMS MSGDSLGSNK GFDRGPELQA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G216700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365142	0.0	AK365142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031F05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003560412.1	0.0	myb family transcription factor APL
Swissprot	Q9SAK5	4e-85	APL_ARATH; Myb family transcription factor APL
TrEMBL	I1GVW2	0.0	I1GVW2_BRADI; Uncharacterized protein
STRING	BRADI1G31837.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	5e-78	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast07G216700.1.p

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]