PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G211800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 336aa    MW: 35933.6 Da    PI: 6.6086
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G211800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-1269113147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Brast07G211800.1.p  69 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 113
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.44E-1663119IPR009057Homeodomain-like
PROSITE profilePS5129414.1864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-667119IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1867116IPR006447Myb domain, plants
SMARTSM007176.5E-1068116IPR001005SANT/Myb domain
PfamPF002495.0E-1069113IPR001005SANT/Myb domain
CDDcd001671.36E-771114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVSMSATPKP LEAAAAVVAG GGDGGKGGGK PPPPQPQQEL ALAAPMAVPA AEAEEARKVR  60
KPYTITKSRE SWTEPEHDKF LEALQLFDRD WKKIEAFVGS KTVIQIRSHA QKYFLKVQKN  120
GTGEHLPPPR PKRKAAHPYP QKASKSALAA PQVVSSQKTP LTATRDLEGV MPMDTSIVVP  180
NTSANAAAPS WDNALVPFSA DHTQGPGAGV ATNNCSSSIE SHSGTWPTSE AVEQENVLPP  240
LRAMPDFSQV YNFLGSVFDP DTSGHLQRLK AMDPIDMETA VLLMRNLALN LTSPDFEAHR  300
KLLLSYGSEG DQIKSEGLEN IGSQSCHLPS MVTSE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G211800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240580.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W33e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0Q3H2D30.0A0A0Q3H2D3_BRADI; Uncharacterized protein
STRINGBRADI1G32330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.26e-79MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]