PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast07G209700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 33854.4 Da PI: 8.5555 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.3 | 9e-51 | 12 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhP+d+elv +yL++k+ g + ++ +vd++k+ePwdLp+ + + kewyf+s rd+kyatg+r+nrat+sgyW Brast07G209700.1.p 12 LPPGFRFHPRDDELVLDYLARKLVGGAaaaP---TvygcpTMVDVDLNKIEPWDLPEIACIGGKEWYFYSLRDRKYATGQRTNRATESGYW 99 79********************999995541...334444699*************7666789**************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r Brast07G209700.1.p 100 KATGKDRPISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRK 143 *********99.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-60 | 4 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.21 | 12 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-25 | 13 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MNNSLSMVEA RLPPGFRFHP RDDELVLDYL ARKLVGGAAA APTVYGCPTM VDVDLNKIEP 60 WDLPEIACIG GKEWYFYSLR DRKYATGQRT NRATESGYWK ATGKDRPISR KGLLVGMRKT 120 LVFYQGRAPK GKKTEWVMHE FRKEGQGDPM KLPFKEDWVL CRVFYKSRAT IAKPPIGNNY 180 NIGSAAATSL PPLIDNYIAF DHPGMSVQSL EGYEQVPCFS NNPSHPLSST SMSMNIPVTA 240 GAPTADQEQQ HVGKAIKDVL SQFSRFDQGN VKREAPPQDG VFAQDGFEYL AESGFSQMWN 300 SLN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-50 | 8 | 167 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast07G209700.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM027572 | 0.0 | HM027572.1 Triticum aestivum NAC transcription factor 7 (NAC7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563412.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 6e-89 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | I1GW57 | 0.0 | I1GW57_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G32660.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-91 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast07G209700.1.p |