PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G207100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 369aa    MW: 39900.9 Da    PI: 9.2627
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G207100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-152168148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed  l++ v+++G g+W+++ r+ g+ R++k+c++rw ++l
  Brast07G207100.1.p 21 KGPWTQAEDAVLLEHVRRHGEGNWNAVRREAGLQRCGKSCRLRWANHL 68
                        79******************************************9986 PP
2Myb_DNA-binding46.86.9e-1574117146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g+++++E+ l+++++ + G++ W++I+++++ gRt++++k++w++
  Brast07G207100.1.p  74 KGPFSPDEERLILRLHGLIGNK-WARISSHLP-GRTDNEVKNYWNT 117
                         79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8631668IPR017930Myb domain
SuperFamilySSF466893.37E-3019115IPR009057Homeodomain-like
SMARTSM007178.1E-132070IPR001005SANT/Myb domain
PfamPF002495.0E-142168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-222275IPR009057Homeodomain-like
CDDcd001674.09E-112368No hitNo description
PROSITE patternPS0017503645IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.28369123IPR017930Myb domain
SMARTSM007172.2E-1573121IPR001005SANT/Myb domain
PfamPF002493.5E-1474117IPR001005SANT/Myb domain
CDDcd001673.82E-1176119No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2476122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEMSSVSSNG VGAGGRGELK KGPWTQAEDA VLLEHVRRHG EGNWNAVRRE AGLQRCGKSC  60
RLRWANHLRP NLRKGPFSPD EERLILRLHG LIGNKWARIS SHLPGRTDNE VKNYWNTRLK  120
RRQRAGQPMY PPDVEREIAL FRAHNLNPFA PAARAARPAP LLVLQDGTRS SFALPPRVPS  180
PSSASAPAPL VGHSYPLPNQ IQQQQQHPVF HHHGGGGFRA SAGLPPLPAR ARELTHPSNQ  240
LHAAAGGDGL VLLEALLLGE ENLTHCHLHH QASSQFPAAP GNQDPLHGGK WDLLFDDMKA  300
ETGRAAEEMM PAGMFVGQIA GDQWLQGAGG GSPGPSSVVT TDDEFGGLDV QRLMSSLPLS  360
TGELNWNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29151221107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G207100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738041e-133AK373804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229745.11e-161transcription factor MYB97
TrEMBLA0A0Q3H3K81e-160A0A0Q3H3K8_BRADI; Uncharacterized protein
STRINGBRADI1G32720.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.16e-62myb domain protein 101