PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G202700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 694aa    MW: 74434.4 Da    PI: 8.217
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G202700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.7e-24129230199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF++
  Brast07G202700.1.p 129 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGAVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFMR 217
                         89****************************996555555..8999*********************************************4 PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                           ++++ l+v+++r+
  Brast07G202700.1.p 218 --TQNGDLCVGIRRA 230
                         ..467778****996 PP
2Auxin_resp118.36.4e-39287370183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++F+vvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Brast07G202700.1.p 287 AANLAANGQPFDVVYYPRASTPEFCVKAGAVRAAMRTQWCPGMRFKMAFETEDSSRISWfMGTVSAVQVSDPIRWPNSPWRLLQ 370
                         7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-37120233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-28127231IPR015300DNA-binding pseudobarrel domain
CDDcd100177.93E-21128229No hitNo description
PfamPF023621.2E-22129230IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07129231IPR003340B3 DNA binding domain
SMARTSM010196.0E-22129231IPR003340B3 DNA binding domain
PfamPF065073.0E-33287370IPR010525Auxin response factor
PROSITE profilePS5174521.063611691IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MITFVDSAAV EREKGGDDGG GRCLDPQLWH ACAGGMVQMP PAGSKVYYFP QGHAEHAHCG  60
GGGGRGVPAL VLCRVAGVRF MADPDTDEVF AKIRLVPARP TQQDPGDAAA ADDINGAAAA  120
SEAEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQTVL AKDVHGAVWK  180
FRHIYRGTPR RHLLTTGWSS FVNQKKLVAG DSIVFMRTQN GDLCVGIRRA KKGGIGGPEL  240
PPPPPPGPNY GGFSMFLRGE EDGGSKIMAA ARGKARVRVR PEEVAEAANL AANGQPFDVV  300
YYPRASTPEF CVKAGAVRAA MRTQWCPGMR FKMAFETEDS SRISWFMGTV SAVQVSDPIR  360
WPNSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LAPFSPPRKK LCVPFYPEIP  420
LDGQFPAPMF HGNPLGRGGV GPMCYFPDGT PAGIQGARHS QFGISLSDLH LNKLQSSPSP  480
HGLHQADHGA QPRIAAGLII GHPKARDDIS CLLTIGNHQN SKKSDGKKAA PQLMLFGKPI  540
LTEQQITLGN SGGFSPTSAR KSPSDGSAEK TANNSDLSSP RSNQNGTTEN LSCGGVPLCQ  600
DSKVPDLGLE TGHCKIFMQS EDVGRTLDLA AVGSYDELYR RLADMFGIEK AELMRQVFYR  660
DAAGALKHTG DEPFSDFTKT ARRLTILTGT GGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-791739142388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11321KGGDDGGGR
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G202700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563445.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLI1GWC10.0I1GWC1_BRADI; Auxin response factor
STRINGBRADI1G33160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]