PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G193700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 352aa    MW: 37589.2 Da    PI: 4.4362
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G193700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.6e-16266302135
                GATA   1 CsnCg..ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg  +++Tp++Rrgpdg++tLCnaCGl+++ kg+
  Brast07G193700.1.p 266 CHHCGinAKNTPMMRRGPDGPRTLCNACGLMWANKGM 302
                         ****833566***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.234130165IPR010399Tify domain
SMARTSM009796.2E-11130165IPR010399Tify domain
PfamPF062004.0E-13132164IPR010399Tify domain
PROSITE profilePS5101713.334191233IPR010402CCT domain
PfamPF062031.1E-15191233IPR010402CCT domain
SMARTSM004011.4E-12260313IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.117260317IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.42E-12264321No hitNo description
CDDcd002022.51E-14265308No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15265306IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.6E-14266301IPR000679Zinc finger, GATA-type
PROSITE patternPS003440266293IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAQHDGKPYQ PRRGPERPPS APQPADDAAL GANAVDHLAA VAAEAEAMNR FEEEHEQQEM  60
EEEDEEEEEV EEEEMEEDDD EEAEGDGQHE QLDGGGNGES VPMDADAAAA AAAAGVPLDP  120
HGAMVAATAA NASTNQLTLS FQGEVYVFDS VSPDKVQAVL LLLGGRELNP GLGAGSSSST  180
PYSKRLNFPH RVASLMRFRE KRKERNFDKK IRYTVRKEVA LRMQRNRGQF TSSKPKPDEA  240
TSELATPDGS PNWGSVEGRP PSAAECHHCG INAKNTPMMR RGPDGPRTLC NACGLMWANK  300
GMLRDLAKST PAPLQVMVSA PNDSNGNAAV APAAEQENPT AVITNGHDSS T*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G193700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753285.10.0GATA transcription factor 20
SwissprotQ5Z4U51e-150GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0Q3H4A20.0A0A0Q3H4A2_BRADI; Uncharacterized protein
STRINGBRADI1G33980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-75ZIM-LIKE 2