PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G191400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 233aa    MW: 25901.9 Da    PI: 7.9176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G191400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.6e-1454105154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++ +hn+ Er RR+++N+ +++Lr+llP a   + kKls  ++L +  eYI  L
  Brast07G191400.1.p  54 KKLSHNAYERDRRKELNDLYSTLRSLLPDA--DRTKKLSIPTTLYQILEYIPRL 105
                         6789*************************6..48888**************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1652126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-1052110No hitNo description
PROSITE profilePS5088813.77653105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1154105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-1454122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-959111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAVLLYEEPV VGNSLSPLVA DIGGFCGRQP PSPPWLGLDL DVQEPSSAGS GSKKKLSHNA  60
YERDRRKELN DLYSTLRSLL PDADRTKKLS IPTTLYQILE YIPRLRKQVE DLEKKKEGLQ  120
MTRARCSAGK VPMSGRTTPV VVSATPLDEK EIMVQVSLLS TMAKSLPLSK CVQVLEDEGL  180
QLISSSTLSN LEVNRAFYNL HVQRSQEMKE YPELLCDKLE KAIEQKAAPY LQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G191400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2065361e-32AB206536.1 Hordeum vulgare HvIRO2 mRNA for basic helix-loop-helix protein, complete cds.
GenBankAK2517461e-32AK251746.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf134m16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193392.18e-68transcription factor ORG2-like
SwissprotA2WZ602e-62IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLM0Y9L21e-71M0Y9L2_HORVV; Uncharacterized protein
STRINGMLOC_67053.12e-72(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-26bHLH family protein