PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G188100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 474aa    MW: 51612.2 Da    PI: 5.5677
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G188100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.93.4e-31266320155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k rlrWt eLHe+Fveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYR 
  Brast07G188100.1.p 266 KSRLRWTLELHESFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRH 320
                         68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.912263323IPR017930Myb domain
SuperFamilySSF466893.4E-16264320IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-29264321IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-24266320IPR006447Myb domain, plants
PfamPF002492.3E-7268319IPR001005SANT/Myb domain
PfamPF143793.2E-22358403IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSSQGVVAVK PTAAPDKTVH YACGSTQPSV HKLLDAKLDH LGLLDDNLSS TSQSSNIKTE  60
LIRSSSLPFR LQERSTQSDT ESPLSQVSHP NFSDPMVSNS STFCTSLFSS SSTNSSPCQQ  120
MGALPFLPHP PKCEQQVILG QSCSSSLHLS GGDIGNDYDE AEQSDDMKDF LNLPVDASDA  180
SYHGENNAMA FTEQMEFQFL SEQLGIAITD NEESPLLDDI YDTPPPQLSS LPVSSCSNQS  240
LHNLGSPVKL PLSSARSSSG STTANKSRLR WTLELHESFV EAVNKLDGPE KATPKGVLKL  300
MKVEGLTIYH VKSHLQKYRH ARYLPDTKED KKATLDCKKV QSAQSGSNGS DLDKNKNLAE  360
ALRMQMEVQK QLHEQLEVQR QLQLRIEEHA KYLQRILEEQ QKTSNGGSSS LKISTEQPES  420
TSKNGTSPEE ATTSSPHPSK NIAPSDAGTE CDSPVRNKRA RVHGDLESES PCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q6YXZ4}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G188100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563523.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_024313685.10.0protein PHOSPHATE STARVATION RESPONSE 3
SwissprotA2X0Q01e-155PHR3_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLI1GWS30.0I1GWS3_BRADI; Uncharacterized protein
STRINGBRADI1G34470.40.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.24e-64G2-like family protein