PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G180700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SRS
Protein Properties Length: 339aa    MW: 34215.6 Da    PI: 8.0854
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G180700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702212.88.2e-661122634154
              DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstk 90 
                          ++sCqdCGn+akkdC+h+RCRtCC+srgf+C thvkstWvpa+krrerqqqlaa+ + aaa++    a+aa+kr+r+     +   +st 
  Brast07G180700.1.p 112 AGTSCQDCGNNAKKDCTHQRCRTCCRSRGFSCPTHVKSTWVPASKRRERQQQLAALFRGAAAANnhtaAAAANKRPRS---LGRLPPASTA 199
                         4579****************************************************9988776654434445555555...4667777888 PP

              DUF702  91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         ++ a++++     ++P+e+s eavfrcvr+++vd++e+elaYqtavsigGh+fkGiL+d+G+++
  Brast07G180700.1.p 200 IVDATTSSGEGEGRFPAELSLEAVFRCVRIGAVDEAEAELAYQTAVSIGGHTFKGILRDHGPAA 263
                         88888999999999***********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.7E-62113262IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.5E-25115157IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.3E-20213261IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAGFSLRGGG GGGASRPGSD RGDHHHPIGS DSLFLYARGA AAAAADTAAG GGGIGFQLWH  60
PHHQAQAHAV PHTSQFFSSA SGGVATGVVL GFSPHDPGVA HAGGVGAGGG RAGTSCQDCG  120
NNAKKDCTHQ RCRTCCRSRG FSCPTHVKST WVPASKRRER QQQLAALFRG AAAANNHTAA  180
AAANKRPRSL GRLPPASTAI VDATTSSGEG EGRFPAELSL EAVFRCVRIG AVDEAEAELA  240
YQTAVSIGGH TFKGILRDHG PAAEDHQEQL MPPGEYGHHQ LTAGGREEGG SSPAGSSEAH  300
GGGGGGASTS AAVLMDPYPT PIGAFAAGTQ FFPHNPRT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G180700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757502.11e-154protein SHI RELATED SEQUENCE 1
SwissprotQ9SD406e-59SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLI1GWZ21e-152I1GWZ2_BRADI; Uncharacterized protein
STRINGBRADI1G34990.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.18e-48Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]