PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G176800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 22836.2 Da PI: 10.0513 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24 | 9.9e-08 | 28 | 76 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 +++kGV +g++ AeI+ ++++lg+f + + Aa a++ a++++ Brast07G176800.1.p 28 KKFKGVKSLG-KGKYGAEIWRK-----EldRTVWLGTFPSLKLAACAYELAAREI 76 589***8666.7*******992.....245**********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.02E-9 | 29 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.063 | 29 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-9 | 29 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-12 | 29 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAEIAKLAAD EAASWEEMCR AMGGPPTKKF KGVKSLGKGK YGAEIWRKEL DRTVWLGTFP 60 SLKLAACAYE LAAREILWQG RKASPNFEVI PSPALRREFD EELDKQELKH RARDGSRRPA 120 CLVRFRPAAN LFGPPIPVVA PPVQAAPAQS GVSATLKLGQ GASSSSSSSG EGQLASGGRL 180 AFKAPMLNPN LTFLAEPVTG DNFTADVWSR GGL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G176800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229787.1 | 1e-110 | ethylene-responsive transcription factor CRF6 | ||||
TrEMBL | I1GX36 | 1e-109 | I1GX36_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G35400.1 | 1e-110 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37147 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25390.2 | 5e-09 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast07G176800.1.p |