PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G175200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 398aa MW: 44109.9 Da PI: 10.3688 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35 | 2.5e-11 | 19 | 116 | 10 | 97 |
HHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE.....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 10 vlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliy...rkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 ++ ++ l++p +fa+ +++ +e++++ + + g++W+v l g+ +l++GW e + a+g+ eg +vv++++ Brast07G175200.1.p 19 SSCLHKLRVPPEFAAGLdpgagvreeEEDGAEQREVLVVGPLGKVWRVGLLCqqqG---GGgggWWLGSGWAELAAAHGVSEGWSVVLRRE 106 455678999****9888999988877444457889***************774433...33456*************************76 PP SSSEE..EEEEE CS B3 86 grsefelvvkvf 97 +r + +v +f Brast07G175200.1.p 107 RRGVA--TVAAF 116 65444..66665 PP | |||||||
2 | B3 | 46.6 | 6e-15 | 141 | 230 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k l ++d l++ +++p kf++eh ++ + s+t ++ ++ ++ W+++l +++++ +++++GW +F a++L +g ++vF+++g+ Brast07G175200.1.p 141 IKLL-QPDDLEK--MRVPDKFVQEHlteTESCPISQTAIILSPLSKFWRLEL--ERGQSDVLFKDGWARFLMAHDLSQGNILVFRYEGNLV 226 4444.6777766..79*********98855667999****************..*******************************998766 PP E..EEE CS B3 90 felvvk 95 f v Brast07G175200.1.p 227 F--SVE 230 6..454 PP | |||||||
3 | B3 | 44.2 | 3.4e-14 | 306 | 388 | 2 | 86 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 fk+ ++ ++lks l + +f++++g++++++++l+ s rsW+v ++ + + +y+ + Wk+F+++n+LkegD ++F ++ Brast07G175200.1.p 306 FKKQINRYSLKSF-LAVKGTFCSSIGLVSACTIKLQTSMDSTRSWSVPFN-TANTYGYITGPRWKRFCRDNKLKEGDLCTFNIVK 388 5777899999998.999***********99977777666888*******4.4444569999********************9655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.811 | 10 | 119 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-12 | 12 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0011 | 12 | 119 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.57E-11 | 17 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-8 | 22 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 136 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-19 | 137 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.899 | 137 | 235 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.65E-15 | 138 | 232 | No hit | No description |
SMART | SM01019 | 1.2E-9 | 140 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-12 | 141 | 227 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.9E-13 | 302 | 396 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-16 | 302 | 396 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.44E-6 | 304 | 384 | No hit | No description |
SMART | SM01019 | 0.012 | 306 | 397 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-10 | 307 | 388 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.856 | 336 | 397 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MAHSARRLRL KFAAPSLSSS CLHKLRVPPE FAAGLDPGAG VREEEEDGAE QREVLVVGPL 60 GKVWRVGLLC QQQGGGGGGW WLGSGWAELA AAHGVSEGWS VVLRRERRGV ATVAAFDPGR 120 CLARLCTPHA GLIFKNRPRF IKLLQPDDLE KMRVPDKFVQ EHLTETESCP ISQTAIILSP 180 LSKFWRLELE RGQSDVLFKD GWARFLMAHD LSQGNILVFR YEGNLVFSVE VFLQNGCLKE 240 YTRAGSLILT DDPNGPRTGT PQSGKELVVA TASKKRKYRK RVVSPNSANK VGSQCKLANT 300 VRRPSFKKQI NRYSLKSFLA VKGTFCSSIG LVSACTIKLQ TSMDSTRSWS VPFNTANTYG 360 YITGPRWKRF CRDNKLKEGD LCTFNIVKTT VWHVVIN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G175200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229793.1 | 0.0 | putative B3 domain-containing protein Os06g0632500 | ||||
Swissprot | Q67VL7 | 1e-138 | Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500 | ||||
TrEMBL | A0A2K2DMV4 | 0.0 | A0A2K2DMV4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G35587.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast07G175200.1.p |