PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G163200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 508aa    MW: 55320 Da    PI: 5.0779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G163200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.7e-1867114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT++Ed++l+ +v+ +G g+W+ + r  g++R++k+c++rw ++l
  Brast07G163200.1.p  67 KGPWTPDEDKRLKTYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 114
                         79******************************************9986 PP
2Myb_DNA-binding48.81.6e-15120163146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++++eE+++ +++++++G++ W++ a ++  gRt++++k++w++
  Brast07G163200.1.p 120 KGPFSKEEEQKVIELHALHGNK-WAKMAGHLK-GRTDNEIKNFWNT 163
                         79********************.********9.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.05962118IPR017930Myb domain
SuperFamilySSF466891.72E-3064161IPR009057Homeodomain-like
SMARTSM007171.8E-1566116IPR001005SANT/Myb domain
PfamPF002493.9E-1667114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2368121IPR009057Homeodomain-like
CDDcd001671.45E-1169114No hitNo description
PROSITE profilePS5129419.389119169IPR017930Myb domain
SMARTSM007175.5E-15119167IPR001005SANT/Myb domain
PfamPF002491.5E-14120163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-24122167IPR009057Homeodomain-like
CDDcd001671.73E-11122163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MKMEEAEKTG LLESPKMEMD SPPLSHSDDD DETEADDDSD GEEEEGGAGA GAGGGVGVGV  60
GGPPLKKGPW TPDEDKRLKT YVEAHGEGNW NQVQRNAGLN RCGKSCRLRW ANHLRPNLKK  120
GPFSKEEEQK VIELHALHGN KWAKMAGHLK GRTDNEIKNF WNTRSKRLSK AGLDLYPDGL  180
LSRVANQDMN CHSPDDSHGK KRHNELSQGN GHDLDDIIFE NLDYKKTENY LAPFYTGPLT  240
VDAMNPLKCQ ASSSSIGAVY NGSPTCEQFL EEPEKTYHSI DMNSGVIENQ FASGSPILHN  300
NFSTPGTFQS PAKIEPPSFQ CGTEVISSWL KSHCSPSQNN VSMDAMVQAG HGLGDPSMPQ  360
GSFSPTFGVY LPESGSLDEF RYSKSPASPD ASFVDNKHRI FPYKCMALWL DACTSDASLG  420
TRILSEDSSH SKYQPNPCSF DAPIGAGVLN EVSSRSENQP VNGLYDPILF GVSSEARSST  480
AGHDHQLEYE SALPWGGMPS ARHMSDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25611671106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G163200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7309000.0EU730900.1 Brachypodium distachyon clone BAC DH003L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563657.20.0transcription factor GAMYB
RefseqXP_010227543.10.0transcription factor GAMYB
RefseqXP_024316040.10.0transcription factor GAMYB
RefseqXP_024316042.10.0transcription factor GAMYB
TrEMBLA0A0Q3H4J10.0A0A0Q3H4J1_BRADI; Uncharacterized protein
STRINGBRADI1G36540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.16e-55myb domain protein 81