PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G159300.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 660aa    MW: 75176.6 Da    PI: 8.11
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G159300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.11.4e-2377168290
                FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         fYn+YA ++GF +r+++s++++r+g    ++++fvC keg+++++  + ++k+rr+r + r gC a+++v ++  +kw++tkl+leH+H +
  Brast07G159300.2.p  77 FYNSYALRLGFGIRVARSRSERRKGveVLVMKRFVCMKEGHHKKKAVEsSNKKRRKRLSIRDGCPAMMEVMRRGAEKWVITKLVLEHTHVV 167
                         9**************9999886665216789**********99988775889999**********************************87 PP

                FAR1  90 a 90 
                         +
  Brast07G159300.2.p 168 S 168
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2177168IPR004330FAR1 DNA binding domain
PfamPF105519.9E-26251343IPR018289MULE transposase domain
PROSITE profilePS5096610.274531567IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-9538566IPR007527Zinc finger, SWIM-type
SMARTSM005755.9E-5542569IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MEFSSSEDDE LVEDFMDVED DAGTGNVDQG AGVVTSQTRC VDHSVGNELL MAADGLGKNG  60
EPHISMEFES DAAARAFYNS YALRLGFGIR VARSRSERRK GVEVLVMKRF VCMKEGHHKK  120
KAVESSNKKR RKRLSIRDGC PAMMEVMRRG AEKWVITKLV LEHTHVVSPD KVREVQLNRL  180
SGKEHDNQLL EVRRNVFGDT DAYGLFSYLM RKQSENSGFF YNIQVDSTNC LRNAVWVDAR  240
SKMAYTYFRD VVYFDTTYSQ NENMLPFAAF TGVNQHGDSV VFGCALVLDR TESSYAWIFE  300
TWLTAMDKRL PFSFTTDEGK AMTEAVAKVF PQCFHRLCRW RILSRCKKKL SDTYMRFPGL  360
HDELKTCINE CDAMPVFDMF WDSILGKYGL RENTWLQHLF EARHKWVPAY LTSSFFAELS  420
LAHRAETVST FYRNNFTTRP PLLALITRFD QHVDKSYISE AQKDLASFHP EQLLKTNSIL  480
EKQAGSIYTR AAFEMFQMEL IEALHQYAVK VQDGSYVKYY VERDGDPRTR HTVAYNIAES  540
KAWCDCCRFS FSGVPCRHVL AVFISADIAM LPELCIMKRW TKKAKTGPES VGCSIEDEIR  600
HADSATSRFN DLVRDAMKCA EKGAVSAGSF RVAKEVLRKA FGQIGTLTRA GPQQIGNNR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118132KKKAVESSNKKRRKR
2127131KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G159300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185207.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI1GRT20.0I1GRT2_BRADI; Uncharacterized protein
STRINGBRADI1G19740.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-123FAR1-related sequence 5