PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G159300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 660aa MW: 75176.6 Da PI: 8.11 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.1 | 1.4e-23 | 77 | 168 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA ++GF +r+++s++++r+g ++++fvC keg+++++ + ++k+rr+r + r gC a+++v ++ +kw++tkl+leH+H + Brast07G159300.1.p 77 FYNSYALRLGFGIRVARSRSERRKGveVLVMKRFVCMKEGHHKKKAVEsSNKKRRKRLSIRDGCPAMMEVMRRGAEKWVITKLVLEHTHVV 167 9**************9999886665216789**********99988775889999**********************************87 PP FAR1 90 a 90 + Brast07G159300.1.p 168 S 168 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-21 | 77 | 168 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 9.9E-26 | 251 | 343 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.274 | 531 | 567 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-9 | 538 | 566 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.9E-5 | 542 | 569 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MEFSSSEDDE LVEDFMDVED DAGTGNVDQG AGVVTSQTRC VDHSVGNELL MAADGLGKNG 60 EPHISMEFES DAAARAFYNS YALRLGFGIR VARSRSERRK GVEVLVMKRF VCMKEGHHKK 120 KAVESSNKKR RKRLSIRDGC PAMMEVMRRG AEKWVITKLV LEHTHVVSPD KVREVQLNRL 180 SGKEHDNQLL EVRRNVFGDT DAYGLFSYLM RKQSENSGFF YNIQVDSTNC LRNAVWVDAR 240 SKMAYTYFRD VVYFDTTYSQ NENMLPFAAF TGVNQHGDSV VFGCALVLDR TESSYAWIFE 300 TWLTAMDKRL PFSFTTDEGK AMTEAVAKVF PQCFHRLCRW RILSRCKKKL SDTYMRFPGL 360 HDELKTCINE CDAMPVFDMF WDSILGKYGL RENTWLQHLF EARHKWVPAY LTSSFFAELS 420 LAHRAETVST FYRNNFTTRP PLLALITRFD QHVDKSYISE AQKDLASFHP EQLLKTNSIL 480 EKQAGSIYTR AAFEMFQMEL IEALHQYAVK VQDGSYVKYY VERDGDPRTR HTVAYNIAES 540 KAWCDCCRFS FSGVPCRHVL AVFISADIAM LPELCIMKRW TKKAKTGPES VGCSIEDEIR 600 HADSATSRFN DLVRDAMKCA EKGAVSAGSF RVAKEVLRKA FGQIGTLTRA GPQQIGNNR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 132 | KKKAVESSNKKRRKR |
2 | 127 | 131 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G159300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185207.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | I1GRT2 | 0.0 | I1GRT2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G19740.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-123 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G159300.1.p |