PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G151300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 346aa    MW: 36981.1 Da    PI: 9.4629
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G151300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17176209134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Brast07G151300.1.p 176 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 209
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.66E-12170209No hitNo description
SMARTSM004013.5E-15170222IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.453174206IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.3E-14174209IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.24E-14175207No hitNo description
PfamPF003202.5E-15176209IPR000679Zinc finger, GATA-type
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSTIYMSQLS AAFPLMEEDH HQDHHQGHFQ NFTLPKDPPI LFPFVISNSS PSDNSLSYGS  60
SGHHLRQQHA MLEAPQHMIG GSSSVFLAPF PTVESIREDM IERSSSYDPY DIEKLQATSG  120
SLKAGKWTAP APAAKMRITR KTSDPAGTVK KPRKRAQAYE DHHMNQGQAL GVIRTCSDCN  180
TTKTPLWRSG PCGPKSLCNA CGIRQRKARR AMMAPGAAAP TGSGIVGAKR SGDAHPKAKK  240
EKRAADVDRS LPFKKRCKVV IQDHTATNDA APVKATAAHE PTVVSVNTAA AAPVKGLVDT  300
IGVNWSNSAA AGATCSFMPS SVPALDEITD AAMLLMTLSC ELVRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G151300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563721.10.0GATA transcription factor 21
SwissprotQ6YW488e-79CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLI1GXU40.0I1GXU4_BRADI; Uncharacterized protein
STRINGBRADI1G37480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.14e-19GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]