PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G150800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 405aa    MW: 42612.5 Da    PI: 7.7728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G150800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11211255554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h + ErrRR+r+N++f+ Lr llP+       K +Ka +L  ++eY+++L
  Brast07G150800.1.p 211 HMISERRRRERLNDSFQCLRALLPPG-----SKKDKANVLASTTEYMSKL 255
                         8899********************95.....599*************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.729206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15207274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-10208259No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15210277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9211255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-12212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MALARIEMSG LMVCTRQQMA VFMGCDSGEI EIGLSSTTVS AAAAADHVRQ SLLEELLQPP  60
PSSSSSSVPS LSVGSPEYSS LTIRSMATTP PPAVASSAGE PSAQAPLPGF PSEQADDAAM  120
AQAMLAVIAS SSSAPSTTST PPRCSLWPER RPTAFKAYAA ALSPRAPRAR RPGQRMIKTC  180
IALLATAHAA AHGEEQPPPP VAPTTASQLH HMISERRRRE RLNDSFQCLR ALLPPGSKKD  240
KANVLASTTE YMSKLVSQVT QLREKNLQLE AQLAGLNPCA TTSGNGGGSS EKIEVDVATT  300
GASTSTPSQQ QPREVSVKIT VRAECDMSEV LISLLTWLKE TGSSTVVSME ARQQSSGVAL  360
AQASLTLRIP EAGDIVDLTR LKEALTKVVW DAVTPPPRRQ PESP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G150800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560643.11e-171putative transcription factor bHLH041
TrEMBLA0A0Q3K1511e-169A0A0Q3K151_BRADI; Uncharacterized protein
STRINGBRADI1G37540.11e-167(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-28bHLH family protein