PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G146400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 517aa    MW: 56149 Da    PI: 6.5064
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G146400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.5e-084464841854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +Fe+   +yp+ +e+  LA++ gL+ +qV++WF N R +
  Brast07G146400.1.p 446 MFENflRPYPKDNEKDMLAARSGLSRSQVSNWFINARVR 484
                         57766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0058240382IPR006563POX domain
PfamPF075261.7E-18245381IPR006563POX domain
PROSITE profilePS5007111.758425488IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-25427500IPR009057Homeodomain-like
SuperFamilySSF466891.2E-15428497IPR009057Homeodomain-like
SMARTSM003895.9E-7428492IPR001356Homeobox domain
CDDcd000862.13E-11428489No hitNo description
PfamPF059201.1E-15445484IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MSSSDPSYQQ LGLDAISTCF IPISSSMMCS SEAPFFHPSI VPHDASFGSG SGSGGADIAA  60
HYNYMANDAM EMDEDAYAYA YAGAGAESCS TVHSVSMLPA AGAGPLGFFQ YGPADVTIAQ  120
PSRMAKLITG EPHCSWLYEG PSAVSIHEPC YLAPFSGAGS FQVPAASGLS LRLGAQSSSV  180
IMASLPEQSS EVSCSGLTHV NSEGFGYRQQ QQPQTAKAHA SDNGMPFQLP PYPEMCSTPP  240
QFSGVLPRSR YAHVAQELLN GFAAYVLNDV ADHTISDGSG NVGIGSEVSS SNQLMLPSNE  300
QRQDDVGWVE AQKLRSDLLR LLQLMDQRCN RCFDDIQATA SRFSSIVAHS AGGGVGAIVA  360
APRFAHRAVW ATYQRLRKRI TGMMVAVAQR EQASSSSSLA EKERRWESSF IQKHWALQQL  420
RRGDQQSWRP QRGLPEKSVA VLKAWMFENF LRPYPKDNEK DMLAARSGLS RSQVSNWFIN  480
ARVRLWKPMI EEMYEELKRS SGGREVEHLG SKDVVC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G146400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227597.10.0BEL1-like homeodomain protein 2
TrEMBLI1GXY40.0I1GXY4_BRADI; Uncharacterized protein
STRINGBRADI1G37800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-50homeobox gene 1