PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G142100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 259aa    MW: 27540 Da    PI: 9.4154
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G142100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.91.3e-2715114299
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX..TTSEEEEESXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk..ekiweFkhksFkkgk 90 
                         F+ k+y+++ed+ ++ +i w + +nsfvv d+  f++++Lp++Fkh+nf+SFvRQLn+Y   ++   +++  +k  ++ weF+h sF +++
  Brast07G142100.1.p  15 FVWKTYRMVEDPGTDGVIGWGAASNSFVVADPFVFSQTLLPTHFKHNNFSSFVRQLNTYVSYSIFLLKSEGFRKvdPDRWEFAHGSFLRSQ 105
                         9**********************************************************6555444443333323499************* PP

                         XXXXXXXXX CS
        HSF_DNA-bind  91 kellekikr 99 
                         ++ll++i r
  Brast07G142100.1.p 106 THLLRNIVR 114
                         *******88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.2E-4011115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.3E-3412114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3012114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.9E-131538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2515114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-135365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-136678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAAASVGGGA TAAPFVWKTY RMVEDPGTDG VIGWGAASNS FVVADPFVFS QTLLPTHFKH  60
NNFSSFVRQL NTYVSYSIFL LKSEGFRKVD PDRWEFAHGS FLRSQTHLLR NIVRGGGGKR  120
KDAAAAEATD QDMTMVATEV VRLKKEQRTI DDRVAAMWRR VQETERRPKQ MLAFLLTVVG  180
DRDTLLRLVS GGDEPVEGGE KRARLRLDGG GASKLGPDAA DFAGFANQLA VDVAAGAGSS  240
VGGGGAGSSF GFGADGGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22811422128Heat shock factor protein 1
5d5v_B2e-22811422128Heat shock factor protein 1
5d5v_D2e-22811422128Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G142100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2346531e-78KF234653.1 Triticum aestivum heat shock factor C2a (HsfC2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755794.11e-137heat stress transcription factor C-2b isoform X1
SwissprotQ0DBL61e-104HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A0Q3H5861e-135A0A0Q3H586_BRADI; Uncharacterized protein
STRINGBRADI1G38140.11e-129(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-54heat shock transcription factor C1