PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G134300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 362aa    MW: 40481.9 Da    PI: 7.2015
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G134300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.6e-52101401128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+
  Brast07G134300.1.p  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 99 
                         69****************************.9***************943444442456******************************** PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         dk+++   + + +g++ktLvfy grap+g+ktdW+mheyrl
  Brast07G134300.1.p 100 DKAIFLGsSARRIGMRKTLVFYVGRAPHGRKTDWIMHEYRL 140
                         *****9756677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-595160IPR003441NAC domain
PROSITE profilePS5100558.01810160IPR003441NAC domain
PfamPF023651.0E-2711140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MHPSSGAVSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGSSAR RIGMRKTLVF  120
YVGRAPHGRK TDWIMHEYRL DQDNVDIQED GWVVCRVFTK KSYPRGINPA EMAAFEDDEL  180
LHPFPGQAQA SAAGAMQTSK HIHMNNPHLM QQQQQHYEYP SFDASMQLPQ LMSTERELPS  240
FLPCPPAVAM TSLDVECSQN LMKLTSNGSS NGMLHHGCIS GGDPHLAATD LSVLDKLLAS  300
HQNLDQLFQG KVTAAAAAAS MAPYQQQQLM ELGSSNGNSS MPRLPLQYLG CEAADLLRFS  360
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-51816215167NO APICAL MERISTEM PROTEIN
1ut4_B6e-51816215167NO APICAL MERISTEM PROTEIN
1ut7_A6e-51816215167NO APICAL MERISTEM PROTEIN
1ut7_B6e-51816215167NO APICAL MERISTEM PROTEIN
3swm_A8e-51816218170NAC domain-containing protein 19
3swm_B8e-51816218170NAC domain-containing protein 19
3swm_C8e-51816218170NAC domain-containing protein 19
3swm_D8e-51816218170NAC domain-containing protein 19
3swp_A8e-51816218170NAC domain-containing protein 19
3swp_B8e-51816218170NAC domain-containing protein 19
3swp_C8e-51816218170NAC domain-containing protein 19
3swp_D8e-51816218170NAC domain-containing protein 19
4dul_A6e-51816215167NAC domain-containing protein 19
4dul_B6e-51816215167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G134300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281860.0AB028186.1 Oryza sativa mRNA for OsNAC7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560688.10.0NAC domain-containing protein 76 isoform X2
SwissprotQ5Z6B61e-123NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLI1GY790.0I1GY79_BRADI; Uncharacterized protein
STRINGBRADI1G38730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-91NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]