PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G127500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 580aa    MW: 63486 Da    PI: 9.9931
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G127500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.34.7e-30153206255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtp+LH +F++ave+LGG+++AtPk +l+ m+v gL+++hvkSHLQ+YR+
  Brast07G127500.1.p 153 PRLRWTPDLHMAFLRAVERLGGQDRATPKLVLQRMNVRGLSIAHVKSHLQMYRS 206
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.303149209IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-28149207IPR009057Homeodomain-like
SuperFamilySSF466893.94E-14151207IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-22153208IPR006447Myb domain, plants
PfamPF002491.2E-8154205IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MLSSFSLSLP IIPKTFPSSS FPVPILSHII RVLTWWFRLR GQEEGGGGVQ EGMGEVKEKE  60
VVEILEDYGK GTGTWDNTVP PAALDLNEDF GEAGNMSYND ADDGGSGSTS EVAGGRSSSN  120
NSSTNNDSES SKGDMDGCEK VPTVRQYNRS KHPRLRWTPD LHMAFLRAVE RLGGQDRATP  180
KLVLQRMNVR GLSIAHVKSH LQMYRSKKIE HQSSHERAAI SSVFPSMNFQ MRRGDHRFHD  240
MFFQRAAGSS LSSRSLKENS GILESRNADL PDTRRIYDLL QRRKPPSAIH TFDFNNYSSL  300
RNQEWAFTQR VAAARTAAVS DLGPAKGLVH DMTFRKERKP TSHKFDLRDA NAANRTSSPL  360
APTSAAADCR PEDGAKVGSI NWIGSSSRPI SRTMSAAGLT TTGFVLSPSL WRRAAGSHGC  420
EHPKRNISTA TSSSDLVGAS RESGPLLLLQ KEEQREPTAP SKNSEVKEMQ FGRDAWKRKT  480
LASEANGWTP ELQLSLSPNV EADNNYARGK KRSSAELEVG SHNHSLPLSL SLSLRDGVAV  540
DNGDGRDARR LEVATGSRSK KALLGLSTLD LTMSIKALE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16154208357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16154208357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16154208357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16154208357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G127500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316695.10.0uncharacterized protein LOC100830272
TrEMBLA0A0Q3H6I60.0A0A0Q3H6I6_BRADI; Uncharacterized protein
STRINGBRADI1G39180.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.17e-32G2-like family protein