PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G123300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CPP | ||||||||
Protein Properties | Length: 496aa MW: 54585.6 Da PI: 7.7361 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.9 | 4.9e-14 | 69 | 108 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +kk+CnCk+s+Clk+YCeCfaag +C+ C+C++C Nk e+ Brast07G123300.1.p 69 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNKVEN 108 689*************************.********9875 PP | |||||||
2 | TCR | 50.7 | 3.4e-16 | 151 | 190 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgCnCkks ClkkYCeCf+a+ Cs++CkC dCkN e Brast07G123300.1.p 151 KHNKGCNCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 190 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.8E-13 | 68 | 108 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.674 | 69 | 191 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.2E-10 | 70 | 105 | IPR005172 | CRC domain |
SMART | SM01114 | 1.0E-18 | 151 | 192 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-12 | 154 | 189 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MEPEKQQKVQ PPVPAPAPAA ELKVPTHQPP PKPAASTQPA MPIPRPWPVA FTPMKPMVEV 60 KSGSTPPKRK KQCNCKNSHC LKLYCECFAA GLYCDGCNCK QCGNKVENEK ARQEAINNTK 120 QRNPKAFQPK IENVSNTLSV RKDAGVPSFP KHNKGCNCKK SGCLKKYCEC FQANILCSKN 180 CKCMDCKNFE GSEELQAIIQ GDNASDRNNI QQATNVTLNG AIESSGHKCS PARRRHLDDP 240 LGSEANHVDA TQVASSTGLE GCIGNYQSKS KMVYRSPLAH TIHPTDVNDL ANHLVIVCRK 300 ATEAFLTVAD RKVEIEVERA IHTKMELNND KITNQEVQKA VVRQPDDATY IDHRNVGDLE 360 SPWFNTQEDY RPASPGTQAL MCDEQGTTFG TDYRSSFPMA LHDQDTSELN VVQEKTVLTG 420 FRDYLRLLIT RGKINANNCA GITEGNISSE SAMELEYQRH QSVSTSLLPL KAVENPKSPD 480 DSENPKASEP SSSNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-27 | 70 | 200 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-27 | 70 | 200 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G123300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753297.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
TrEMBL | I1GYE3 | 0.0 | I1GYE3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G40407.2 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5755 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 7e-87 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Brast07G123300.1.p |