PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G117600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 361aa    MW: 40088.8 Da    PI: 7.4226
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G117600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.7e-091375656
                        S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
            Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                        +ft+ ++ e+ee+ +   n  p ++ ++ LA+k           +++ +qV +WFqNrR+ ++
  Brast07G117600.1.p 13 RFTHAEVAEMEEHLRHlnNAIPHRDVIQGLADKFtasparagkiSVQPKQVWNWFQNRRYSQR 75
                        69999*******999554999*********************99****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-111278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-71379IPR009057Homeodomain-like
PfamPF000462.6E-61375IPR001356Homeobox domain
CDDcd000861.18E-41377No hitNo description
PROSITE profilePS5007110.1391377IPR001356Homeobox domain
PfamPF167199.6E-41123250IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRPPSSGGP AFRFTHAEVA EMEEHLRHLN NAIPHRDVIQ GLADKFTASP ARAGKISVQP  60
KQVWNWFQNR RYSQRNRTTR GAPLPQGKML PTGAADEHHS ASFGAQSASS VYPTGKNSSN  120
GGQIDFEAKS ARDGAWYDVA HFLSHRLFET GEPEVRVRFS GFGAEEDEWI NVRKCVRQRS  180
LPCEPTECVA VLPGDLILCF QEGKEQALYF DARILDAQRR RHDVRGCRCR FLVRYDHDHS  240
EEIVPLRKVC RRPDNGFRQH ILHANRVAAS AQDVHMGIQI DRSSAEQKPQ KPHKMMDVNT  300
DEVTMVPKSE PTDKPVVSLP AASTSTRGDS SSDVTMRDAG ATPEVEAADE GQGDKMNVGE  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-471222542134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-471222542134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-471222542134SHH1 SAWADEE
4iur_B1e-471222542134SHH1 SAWADEE
4iut_A1e-471222542134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-471222542134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-471222542134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-471222542134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-471222542134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-471222542134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G117600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563870.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_010227690.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-112SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLI1GYK90.0I1GYK9_BRADI; Uncharacterized protein
STRINGBRADI1G42040.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-101sequence-specific DNA binding transcription factors;sequence-specific DNA binding