PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G112400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 431aa MW: 47501.7 Da PI: 5.677

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G112400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	88	109	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk+F++ ++ H+r+H Brast07G112400.1.p 88 QCPECGKHFKNDKSMFGHLRSH 109 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.263	87	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0054	87	109	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.0055	88	109	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.55E-8	88	109	No hit	No description
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.55E-8	294	321	No hit	No description
Pfam	PF13912	2.6E-8	299	323	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.023	299	321	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.993	299	326	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	301	321	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MLSHDELKGT NAAAPTFIQE VLHGEVLLSG DDGYAGGKEE VLFGDEYARE DPHKSVEVEE 60 GEILPLNGQE VDHSGQDWEE QGSIGDVQCP ECGKHFKNDK SMFGHLRSHP NRGYKGATPP 120 TKPKKLLPNS DAAIASPVDK ARYSQRDPNL NAYEILAAYV MLTLKSSDDQ AVSVAPDNKR 180 KYESGELDVP EEELVISKSG ADVVLSDDHG SSVADKPGDD VVCRDKHDSA VADMVGADMV 240 LRDEHASSVA GMNAVLHNEH GSSSVVEVPR KAWRKKSKEG REGHRKEKGV PSPKEKRPYI 300 CKHCPAEFPS HQALGGHMAA HNKERRIQAQ IEQAAEEAHL GKIQQSLNRQ EANCGSDESR 360 RASLPLSTRE LLMERYNKLF QEGWQSRQGY MRQHNDSKDG DSPMIAPPVI ARDRHRPLDI 420 DLNVEAPEKE *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MLSHDELKGT NAAAPTFIQE VLHGEVLLSG DDGYAGGKEE VLFGDEYARE DPHKSVEVEE  60
GEILPLNGQE VDHSGQDWEE QGSIGDVQCP ECGKHFKNDK SMFGHLRSHP NRGYKGATPP  120
TKPKKLLPNS DAAIASPVDK ARYSQRDPNL NAYEILAAYV MLTLKSSDDQ AVSVAPDNKR  180
KYESGELDVP EEELVISKSG ADVVLSDDHG SSVADKPGDD VVCRDKHDSA VADMVGADMV  240
LRDEHASSVA GMNAVLHNEH GSSSVVEVPR KAWRKKSKEG REGHRKEKGV PSPKEKRPYI  300
CKHCPAEFPS HQALGGHMAA HNKERRIQAQ IEQAAEEAHL GKIQQSLNRQ EANCGSDESR  360
RASLPLSTRE LLMERYNKLF QEGWQSRQGY MRQHNDSKDG DSPMIAPPVI ARDRHRPLDI  420
DLNVEAPEKE *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G112400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313820.1	0.0	uncharacterized protein LOC112270196
TrEMBL	A0A0Q3JLH5	0.0	A0A0Q3JLH5_BRADI; Uncharacterized protein
STRING	BRADI1G42950.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20824	5	5

Link Out ? help Back to Top
Phytozome	Brast07G112400.1.p