PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G106300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CO-like | ||||||||
Protein Properties | Length: 401aa MW: 43925.6 Da PI: 4.8422 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.5 | 4.1e-06 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ Brast07G106300.2.p 4 LCDYCGEHRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 6******99*********************657888889876 PP | |||||||
2 | zf-B_box | 26 | 2e-08 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++ C + ++ lC++C ++H+ H++++ Brast07G106300.2.p 47 LCDRCASQPAMVRCLEENTSLCQNCDWNGHSAgspdagHKRQN 89 7*****************************6688999998876 PP | |||||||
3 | CCT | 62.6 | 1.2e-21 | 344 | 387 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+k+RkF+ kirYesRKa+A+ R+RvKGrFvk+ Brast07G106300.2.p 344 RDSAITRYKEKKKRRKFDHKIRYESRKARADVRKRVKGRFVKAG 387 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.8E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.869 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.20E-8 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.93 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.6E-6 | 47 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.74E-5 | 47 | 88 | No hit | No description |
SMART | SM00336 | 0.1 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.971 | 344 | 386 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.1E-17 | 344 | 386 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGALCDYCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60 LEENTSLCQN CDWNGHSAGS PDAGHKRQNI NCYSGCPSSA ELSRVWSFIL DIPNVAPEPN 120 CEQVISMMSI SDSAVSNEDN APRGNSFLDI ASATLSNDHN NDDKLKTVIG SSSEAGVNLL 180 PHATDQTAVS VDSTTAKVPY TPDKHMFSKD TIYEDFSMDD IDLSYENYEE LFGNSHIQTE 240 ELFDDAGIDS YFEMKEVLAG SSDEPKPMQP AASNAVSADS GMSNPGVKDD SSLCIPVRQA 300 LSFSGFTAES NAGDYQDCGV SSLLLMGEPP WLPPGPDGSF AGIRDSAITR YKEKKKRRKF 360 DHKIRYESRK ARADVRKRVK GRFVKAGEAY DYDPLDTRSY * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 353 | 357 | KKKRR |
2 | 353 | 358 | KKKRRK |
3 | 354 | 358 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G106300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK253130 | 0.0 | AK253130.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf114k16, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227752.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X2 | ||||
Swissprot | Q9SSE5 | 1e-122 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | I1GYX7 | 0.0 | I1GYX7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G43220.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 2e-99 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G106300.2.p |