PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G102600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YB

Protein Properties

Length: 209aa MW: 22732 Da PI: 7.5545

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G102600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	132.6	1.2e-41	1	88	8	95
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +Pi+nv rim++vlP +akis+dake+vqec sefisf+t+ea+++c++e rkti+++d+lwal +lGf+dy++p+++yl++ r++e+ Brast07G102600.1.p 1 MPITNVNRIMRRVLPPHAKISDDAKELVQECTSEFISFLTGEANEQCHKECRKTISAHDILWALRSLGFNDYIQPVTAYLNRMRDIEN 88 8************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	3.2E-24	1	64	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.6E-39	1	88	IPR009072	Histone-fold
SuperFamily	SSF47113	9.51E-32	1	88	IPR009072	Histone-fold
PRINTS	PR00615	2.3E-11	28	46	No hit	No description
PRINTS	PR00615	2.3E-11	47	65	No hit	No description
PRINTS	PR00615	2.3E-11	66	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MPITNVNRIM RRVLPPHAKI SDDAKELVQE CTSEFISFLT GEANEQCHKE CRKTISAHDI 60 LWALRSLGFN DYIQPVTAYL NRMRDIENGV VVVNPLPAGP RPPPLPPSAA GSSQGLMQQM 120 QMQMLMQMQM QLGGAMYAPR PPAPVQQQHY AIPAMPMRVR PPFVGGQQGA VFRGNQPMAP 180 YYGGEHLAYG EGSSRGAGDV GDEGSSSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	5e-41	1	85	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G102600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229872.1	2e-68	nuclear transcription factor Y subunit B-8
TrEMBL	A0A0Q3K2Q1	6e-67	A0A0Q3K2Q1_BRADI; Uncharacterized protein
STRING	BRADI1G43460.1	2e-67	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29183	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	4e-42	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Brast07G102600.1.p