PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast07G102500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 147aa MW: 15639.2 Da PI: 4.2119 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 40.7 | 5.6e-13 | 44 | 90 | 48 | 94 |
NF-YB 48 seasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 s a+++c+++k+ ++gdd l a+ +lGf+dyv+pl+ yl+ y el+ Brast07G102500.1.p 44 SLAAEQCKEQKKTILDGDDALDAMEDLGFDDYVQPLSDYLRLYHELH 90 56899**988888889***************************9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.18E-8 | 18 | 92 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.0E-11 | 44 | 98 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 147 aa Download sequence Send to blast |
MEGRSQANDH GNDAREANLT EIMEGTLPQC PRARGAVEQS VEQSLAAEQC KEQKKTILDG 60 DDALDAMEDL GFDDYVQPLS DYLRLYHELH DLVRRDDRQP APAPPAAAVT TVEMPPPPPP 120 QPSGAAAAGA SRMPPASAAA PARDNE* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast07G102500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229873.2 | 4e-35 | nuclear transcription factor Y subunit B-1 | ||||
TrEMBL | I1GZ07 | 1e-41 | I1GZ07_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G43490.1 | 2e-42 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37154 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14540.1 | 1e-12 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast07G102500.1.p |