PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G101100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 442aa    MW: 47652.8 Da    PI: 5.8555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G101100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09272320355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Brast07G101100.1.p 272 NSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSLQ 320
                         58*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.12E-10267324No hitNo description
SuperFamilySSF474591.96E-16267337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6272320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-16272334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEMNEKNDTD LEKDQPSGHN QHPSFHGPGF STEAQIESST NALAAMGNPF PPGLWNPPGQ  60
NFGLGENNTN AMITGHPFSS FLGMLSAAVP TYAGPSGFMD CGTGFPSLNG GNLGPMMDHP  120
FPRNQPLGSF LNGTEPSREI EMTVDEGSKD GASLAADRQQ GDTEGSHGVD ASKELSKPGC  180
SGGVCQDEGP SVSSAKKRKR SGQDRGVKHV QEGCPQLATM VAKQEKDNDE KDGPKRPISA  240
SRKSNGKQTE ENSDAPKEDY IHIRARSGQA TNSHSLAERV RREKISERMK FLQDLVPGCS  300
KVIGKAVMLD EIINYVQSLQ RQVEFLLMKL STVNPALDFN IERILSKDFF QSQGTTASSA  360
FGFLPENSPH FLHPPKHSQA ALHGIVNPTD AFGRVTNAPV GSSSSFKEPV HQMPSNFDGE  420
FHNVTGMPFS LFNDQESNVE P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G101100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7308970.0EU730897.1 Brachypodium distachyon clone BAC DB038O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563957.10.0transcription factor bHLH49
TrEMBLI1GZ240.0I1GZ24_BRADI; Uncharacterized protein
STRINGBRADI1G43650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-65bHLH family protein