PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G100900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 18126.5 Da PI: 6.0777 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.7e-05 | 50 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C +Cg +F + ++H+ + H Brast07G100900.1.p 50 FECDICGFTFCTVKAIRKHMLSsH 73 89******************9988 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00057 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cgk+F + L H +H Brast07G100900.1.p 87 YMCEHCGKRFMSGRALGGHRASH 109 89********8888887777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.45 | 50 | 78 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 3.6E-4 | 50 | 73 | No hit | No description |
SMART | SM00355 | 4.0E-4 | 50 | 73 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.04E-8 | 50 | 109 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 52 | 73 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.8E-5 | 85 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.217 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.8E-9 | 87 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MAASPNFPRL TLSLSSAGGG DEEPLRYYPW RVKSAHELDD GFIDPLHTSF ECDICGFTFC 60 TVKAIRKHML SSHPDADPVE TPSIRRYMCE HCGKRFMSGR ALGGHRASHR GKKGCLMLSK 120 QEHVEDFPSM AAAAAIGAPP AMVRDFDLNE PAPEEEQEEK DPPP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G100900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0Q3KQH7 | 1e-62 | A0A0Q3KQH7_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37257 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 4e-09 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Brast07G100900.1.p |