PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G098400.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 417aa    MW: 46852.9 Da    PI: 4.4209
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G098400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.31.8e-204913053128
                 NAM  53 aeekewyfFskrdkkyatgkrknratk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         ++ +  +fF+++ k+y+tg+rk+r ++     + +W++tgk+k+v++ +g++ g+kk++v+y  + +  k++kt+Wvmh+y+l
  Brast07G098400.2.p  49 QDGSVSHFFHRTYKAYNTGTRKRRRINtsdlaDVRWHKTGKTKPVIV-DGKHLGCKKIMVLYmsTVKGGKPKKTNWVMHQYHL 130
                         445567******************64434555889************.999***********6644666777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.2641149IPR003441NAC domain
SuperFamilySSF1019412.88E-2148149IPR003441NAC domain
PfamPF023659.0E-854130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MTKQVLNLTH SLMNLFQLLR KMMVSATLIH SNFQGFVGNF VNETIGLKQD GSVSHFFHRT  60
YKAYNTGTRK RRRINTSDLA DVRWHKTGKT KPVIVDGKHL GCKKIMVLYM STVKGGKPKK  120
TNWVMHQYHL GTGEDEQNGE YVVSKLFFQQ QFKPGEKNAQ ELTTADALET IAAEADLPDL  180
PEPALDEQGE EEHTSSITNQ EVLHNNEHTA DWEALPYKQQ FKSGEKNAQE LTTADALETI  240
AAEEDLPDLP EPALDEQEEH ISSITDQEVL HNNDHIADRE ALPYQESRNC EITMEEKAAE  300
EDAAYPSSGK PEDGDNPSSQ DPKWWDGESQ FLLTSQQLAE TLPCLDEFLQ SQTSGDEQDT  360
IKPKLADYAK LPVEDLKQDL EKCQELGFSD ADFRLSQIEF SQDSCTAAWA GGNMLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16872RKRRR
26973KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G098400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7291471e-113KP729147.1 Stipa purpurea microsatellite ZH4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227769.10.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLA0A0Q3H6S90.0A0A0Q3H6S9_BRADI; Uncharacterized protein
STRINGBRADI1G43840.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.15e-70NAC family protein