PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G095900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 438aa    MW: 47978.9 Da    PI: 5.4318
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G095900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.51.3e-081760340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ + + +++++C  ++ +lC+ C ++ H+       H++v
  Brast07G095900.1.p 17 ARACDGCLRRRARWYCAADDAFLCQACDTSVHSAnplarrHERV 60
                        578*****************************667888888876 PP
2CCT66.85.9e-23383426144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R+a+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Brast07G095900.1.p 383 RDARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 426
                         99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.8E-121562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7651562IPR000315B-box-type zinc finger
CDDcd000213.80E-101862No hitNo description
PfamPF006432.5E-71860IPR000315B-box-type zinc finger
PfamPF062031.1E-17383425IPR010402CCT domain
PROSITE profilePS5101715.934383425IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSSSAKASAG AMGSKAARAC DGCLRRRARW YCAADDAFLC QACDTSVHSA NPLARRHERV  60
RLRPTSPQPQ PGAGPRARRG DEVVPAWFKR KPRTPRGKSV VNGHHLLSSR RPVVPDEASG  120
GESSPEEHKL FEGETDEEEL LYSVPVFDPA LAEFCSQSSP RHLEADASCC NEGSVVLESP  180
TEPAAAAAPS PAVDQFFPDD SAVNNFGPTD AELMEFAADM EALLGRGLDE GNEEEPFCME  240
ALGLVQPMDV DGAGGRVKME TEGQARGMFL ACVLEREPEP ELSGNMLGID FDDYGSPQAT  300
PDESAPSRSA RFLPRSLSLN LNYEAIIDNW EKSPWADGER PDVKLDDCWP HDYSMSVWMM  360
GGVLVGNGTD ELRTPRMKMD GGRDARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG  420
RFVKRANGVA VATACVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393409RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G095900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560836.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLI1GZ670.0I1GZ67_BRADI; Uncharacterized protein
STRINGBRADI1G43990.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.19e-72B-box type zinc finger protein with CCT domain