PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G093800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 279aa    MW: 32135.5 Da    PI: 9.3735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G093800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.9e-11164210147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+ WT  E+ l++++ + +G g Wk I++ + + Rt+ q+ s+ qky
  Brast07G093800.1.p 164 RQFWTMAEHRLFLRGLRVYGRGKWKDISKNFVTSRTPVQISSHAQKY 210
                         789*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.595159215IPR017930Myb domain
SMARTSM007171.5E-8163213IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-14163216IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-13164213IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-10164212IPR009057Homeodomain-like
CDDcd116608.97E-8165204No hitNo description
PfamPF002493.4E-8166210IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEATTFTMNT RANLEWTSSE VVEARSVIAS LNSKYCGYDG EYHDNIMGEL QAKFPWKTMH  60
QVRGLYIDLV KEMSMMQHEE KEYGGANRMH GVIRNIDGHV NKNYGVLEER EVSMDGKDFL  120
HGFPLQHVGI VETMMQVPVV KENKVEVLEK KMPVHQPVVA HYTRQFWTMA EHRLFLRGLR  180
VYGRGKWKDI SKNFVTSRTP VQISSHAQKY FKRLQSKGSE RQRYNINDVE LDSNDPWNTK  240
NNARSSQSTT AIPTSSFLHV PSNPSITMDN IGQFKFPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G093800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229882.26e-85transcription factor DIVARICATA
TrEMBLA0A0Q3H7V11e-120A0A0Q3H7V1_BRADI; Uncharacterized protein
STRINGBRADI1G72300.16e-89(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-21MYB family protein