PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G091900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-X1 | ||||||||
Protein Properties | Length: 656aa MW: 70783.9 Da PI: 8.2083 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 20.9 | 7.7e-07 | 228 | 245 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H Cq CH+GpC++C Brast07G091900.1.p 228 CGNHDCQDVCHPGPCGEC 245 ****************** PP | |||||||
2 | zf-NF-X1 | 25.6 | 2.6e-08 | 286 | 303 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C+ +CHeG+CppC Brast07G091900.1.p 286 CGMHRCKVTCHEGECPPC 303 ****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd06008 | 1.54E-5 | 82 | 147 | No hit | No description |
SMART | SM00438 | 0.023 | 109 | 127 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.6 | 111 | 126 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.81E-11 | 154 | 202 | No hit | No description |
SMART | SM00438 | 0.0012 | 164 | 183 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.019 | 164 | 181 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.11E-9 | 218 | 261 | No hit | No description |
SMART | SM00438 | 5.9E-4 | 228 | 247 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.6E-5 | 228 | 245 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.05E-14 | 276 | 324 | No hit | No description |
SMART | SM00438 | 3.6E-5 | 286 | 305 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.8E-7 | 286 | 303 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 12 | 342 | 351 | IPR000967 | Zinc finger, NF-X1-type |
Gene3D | G3DSA:3.30.70.330 | 1.6E-4 | 455 | 502 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MVRRSAPVWS CGSCFSIFHL PCIRKWARSP ASVSDASDPA SSWRCPGCQS VHDVPARDIA 60 YTCFCGRRRD PPNDLFLTPH SCGEPCSKPL DRTDPAAKGV SPEDVASRCP HVCVLQCHPG 120 PCPPCKAFAP ARPCPCGKQS ITRRCADRST PVTCGQQCEQ PLPCRRHSCQ KICHTGPCGD 180 CEVNFSAQCF CGKKTETLLC GEMVLKGKLS EKDGVFSCSD VCGHHLPCGN HDCQDVCHPG 240 PCGECELVPA KVTTCHCGKT RLQENRVSCL DPIPTCDKVC DKMLPCGMHR CKVTCHEGEC 300 PPCLVRVEQR CRCGSSGQMV ECYKVLKEEF RCNKPCGRKK NCGRHRCKER CKFLVLGKTR 360 GNSSNNVKVH VFCHMVKDKR DAIRLIADRW KLSVQAVGWE PKRFVTVHVT PKSKVPARVL 420 GLKPGVPVSA SHPYFDPLVD MDPRLVVAML DLPRDADVSS LVLRFGGECE LVWLNDKNAL 480 AVFSDPARAA TALRRLDYGS AYQGAAMFCP SSSTQASSSG NIWVAGQRDG GLAAKGSANP 540 WKKASTSEPD PSGDWTVLGQ SPGTGVLGQA PGSVWRRGDT ASQVMGTNRW NALESDAATS 600 LGTSNKHKPP PRGDAGSSAS APRTGAGSSL ETSAGQSVSK LQPDIEVDDW EESCE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G091900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563997.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 1e-142 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A2K2DPA6 | 0.0 | A0A2K2DPA6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G44270.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 1e-141 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G091900.1.p |